Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1274 105 6e-18 >seq1274 Length=440581 Score = 105 bits (116), Expect = 6e-18 Identities = 149/205 (73%), Gaps = 7/205 (3%) Strand=Plus/Plus Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 ||||| | ||||| ||| || || ||| ||| || | ||| |||||||||||||| | Sbjct 124111 AACCT-CATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTT 124169 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 |||| ||||| || ||||||||||| || |||||| || ||||| || || |||| Sbjct 124170 TTTTCAGCCAGAAAATAGCGGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAA 124229 Query 4687 ACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC---TTTAATCCATTTTAATGCCC 4743 | || || | | | | ||| | |||| | || || ||||| |||||||||| Sbjct 124230 ATGCAACCACAC-GTTCAGGAA--ATGTGGCACTCTCATGATTTATCCAATTTAATGCCC 124286 Query 4744 AGTTAGCTTTTTTCTTAACGCACGG 4768 |||||||||||||| |||||| || Sbjct 124287 AGTTAGCTTTTTTCGCAACGCATGG 124311 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 |||||||| || || | ||||||||| || | ||||| || || || || | || || Sbjct 124478 TACATTTCTGAGTGCACATTTTCTATGGCGACTTGAAAACCATAGAAACAACGTGCCTCG 124537 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 |||||||| ||||| | || ||||| ||| || | || || || || || || ||| Sbjct 124538 GTTACTTGTACTTCCTGACTAAATCGTTCGACAAGATTCTCATTAACGATTCCATCAGAA 124597 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 || ||||| || || || ||||||||||| || Sbjct 124598 GCCGCAAAGAATGCTAAGACATGAGATATGAA 124629 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 4373 AAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAAT 4432 ||| |||| ||||| |||||||| ||||| || | ||| ||| ||||| ||||| || Sbjct 123720 AAGTAATCTATCAGCAACAAATTCGATATATTGACACATAAGTGTACAGTTCATTCCTAT 123779 Query 4433 TAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 | | ||||||| || | || ||||| |||||||| || | ||||| ||| | || Sbjct 123780 CATTTGAACAGGTAAAGCTTCCGTTAAAAATTCTTGTTCAATTTTGACGGCATCTTTAAT 123839 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGC 4552 || | | | ||| ||||||||| | ||| | | | |||| ||||| || Sbjct 123840 AATTGATGTGACCCGATCGCAAGATGGTTTTTGTACAATATGTTTGAACATCAAACATGC 123899 Query 4553 AAAATCACAATGCAAACC 4570 ||||||||||| || || Sbjct 123900 GAAATCACAATGTAATCC 123917 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 5035 CTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAG 5094 |||||| | ||| ||||| |||||||||||||| || ||||| |||||||| ||||| Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 5095 ACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCT 5134 |||||| ||||| | ||||| |||| | || ||||| Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCT 124841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427020667256147