Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq911 138 2e-27 >seq911 Length=74078 Score = 138 bits (152), Expect = 2e-27 Identities = 219/314 (70%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 99857 TCGTGTCAGCTTTATCAACGCAGCGCCGATGTGTTCTTAGGGGTGCCGTTTAATATTGCG 99916 || || ||||||||||| || ||||||||| ||||| | || ||||||||||| Sbjct 47005 TCTTGCCAGCTTTATCAGCGTTCATGCGATGTGTTTTTAGGCCTACCTTTTAATATTGCT 46946 Query 99917 TCATACGCTTTGTTGATCCACATGTTTGCACAGCAGGCTAACATGACCGTGGGTGATTTC 99976 ||||||||||| | || ||| | || ||||| | | || | || || ||||| Sbjct 46945 AGCTACGCTTTGTTAGTACATATGATAGCGCAGCAATGTGATTTGGCGGTAGGCGATTTT 46886 Query 99977 GTCTGGTCTGGTGGTGACGTACATCTGTACAATAACCATCTGGAACAAACCCGTACCCAG 100036 || ||| |||||||||| ||||| || |||||| |||||||||| | | || Sbjct 46885 GTTTGGACTGGTGGTGATACCCATCTTTATGCCAACCATATGGAACAAACACATTTACAA 46826 Query 100037 TTAGGTCGTGCCCCGCGTCCGTTACCTAAGCTGATTATCAAACGTAAGCCAGACTCCATC 100096 || ||||| | || || | | |||||| | | || || || || ||| | || || Sbjct 46825 TTGAGTCGTACGCCACGCGCACTCCCTAAGTTAGTGATTAAGCGCAAACCAAATTCGATT 46766 Query 100097 TTCGAATATAAGTTTGAAGACTTCGAACTTGAAGGCTACGACCCGCATCCTGCAATCAAA 100156 || || || ||||||||||| || | || | ||| || ||| ||||||| || || Sbjct 46765 TTTGATTACTGTTTTGAAGACTTTGAGATCGAGGACTATGATCCGTATCCTGCCATTAAG 46706 Query 100157 GCACCGGTCGCGAT 100170 |||||||| ||||| Sbjct 46705 GCACCGGTAGCGAT 46692 Score = 132 bits (146), Expect = 7e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 99227 TCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACT 99286 || ||||| || || || ||||| || ||| |||| ||||||||||||| || || || Sbjct 47401 TCCATTTTTGGTCATCAAATGCGCTTTAATTTGCAGCAAGGCTTTCCGCTCGTCACCACA 47342 Query 99287 AAGCGCTGTCACATGCGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACC 99346 || ||||| | ||||| |||||||| ||| | || ||||| | |||||||| ||| Sbjct 47341 AAAAAATGTCATCTACGTTCTATTATTCATGAATTACTTTGGTTTTTAAAAGGCGAAACC 47282 Query 99347 AATGTCAAATATTTAAATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGAT 99406 ||| | ||| || |||| ||| ||| ||||| ||||| || ||| | ||| | Sbjct 47281 AATATTGCTTATCTACATGACAATAATGTCACTATCTGGGATGAGTGGGCCGATAAAAAC 47222 Query 99407 GGCGACCTCGGACCGGTATACGGTAAACAGTGGCGGTCTTGGC 99449 || || || ||||| || || |||||||| ||||| |||||| Sbjct 47221 GGTGATCTAGGACCCGTTTATGGTAAACAATGGCGTGCTTGGC 47179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716414214707800