Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031011.1 Length=168993 Score E Sequences producing significant alignments: (Bits) Value seq2372 143 3e-29 seq2331 122 9e-23 seq3883 93.3 5e-14 >seq2372 Length=84335 Score = 143 bits (158), Expect = 3e-29 Identities = 306/452 (68%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 38189 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 38248 ||| || | ||| | ||| || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 38249 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 38308 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 38309 AGTAGCAGCGCCGCCACGAATTCCGCCCTGTGAACATGAGTTAACTGCAGCCTGAAAATG 38368 || || || || || || | ||||| || ||||| || || || || | || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 38369 TTTCCAAAAAGGAATAACACCAGGATGGCATACATCACCCATGCCAATCTCAGAACCTTC 38428 || |||| |||||| ||||| |||| | | || || || ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930 Query 38429 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 38488 |||||| ||| |||| | ||||| |||||||||||||||| || | |||| |||||| Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAAT 73990 Query 38489 TG---AAGCGGAAGCCTTATTGATAGACTTCAATGA--ATCACCTGCCTCAATAACAACA 38543 | |||| || ||| || || |||| || |||| | |||||| | ||| Sbjct 73991 AGCGCTCGCGGTGGC---ATTAATTGA-GTCAA-GACTATCATCGCACTCAATCAATACA 74045 Query 38544 CATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAA 38603 || ||||||||||| ||||| ||||| || || |||||||| || || || | ||| Sbjct 74046 CACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAA 74105 Query 38604 ATCTGTCGAGTAGATACTGCTTCATAAAAACG 38635 || | || || | || ||||||||||| Sbjct 74106 ATTTTAAAGGTGGAAATCGCATCATAAAAACG 74137 >seq2331 Length=68774 Score = 122 bits (134), Expect = 9e-23 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 126791 GTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 126850 ||||| |||||||| ||||| || || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 126851 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 126910 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 126911 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 126960 || | ||||||||||| | || || || || | |||||| |||||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 >seq3883 Length=158444 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 126791 GTAAAGGTACGAGCGATAACATCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 126850 ||||| || |||| || || || || || || ||| | ||||||||| || || Sbjct 116550 GTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTACG 116491 Query 126851 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 126910 |||||||| || ||||| || || | || ||||| ||||| |||| | | ||||||| Sbjct 116490 GCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATCT 116431 Query 126911 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 126961 | ||||||||| | |||||||| || ||||| |||||||||||| Sbjct 116430 AATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCA 116380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540612031610920