Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq2372 194 2e-44 seq3883 145 8e-30 seq1913 134 1e-26 seq3995 120 3e-22 seq2331 109 6e-19 >seq2372 Length=84335 Score = 194 bits (214), Expect = 2e-44 Identities = 316/446 (71%), Gaps = 12/446 (3%) Strand=Plus/Plus Query 139600 GATATAGTCGTTTTTAATATAACGTTCGATCATTAAGTCATTAATCTGGACACCATAATC 139659 ||||| ||||||||||| |||| | | |||||| | |||||| || || |||||||| Sbjct 73661 GATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATTTGTACCCCATAATC 73720 Query 139660 TAAATGACGAATACGGTTTTCATCGATACCTTTATTATTCTTCAGTACGATTAATTTTTC 139719 |||||| || | || ||||| || ||||| ||||| || || | ||| ||||| Sbjct 73721 TAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGCACCAATAAGTTTTC 73780 Query 139720 ATATTCCAGATGCCACATCGGATAATATAATGTCGCCGCACCACCACGTACACCACCTTG 139779 ||| | |||||| | ||||||| ||| || ||||| || || ||||| || ||||| Sbjct 73781 TACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCGCGTACCCCGCCTTG 73840 Query 139780 TGAACATGATTTCACTGATGCCTGATGAGT-TTTCCAGAATGGAATAACACCAGTGTG-- 139836 ||||| |||||||| | || || ||| || | ||||||||| |||||| || Sbjct 73841 AGAACAGGATTTCACAGCTGTTTG-GAAGTACTTATAAAATGGAATACAACCAGTATGGA 73899 Query 139837 ACGAACTTCGCCCGCGCCAATTTTAGAACCTTCTGCACGATACATACCAGCATTAACACC 139896 ||| ||||||| ||| || | ||| ||||| | |||| ||||||| || Sbjct 73900 ACG--CTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTACCGGCATTAATGCC 73957 Query 139897 AATACCAGCACGTTTACTGAT--GTACTTAATAATA-CATTCGTTTGTCTTGTTAATTGA 139953 ||| ||||| |||| |||| ||| |||| |||| | ||| || |||||||| Sbjct 73958 AATTCCAGCGCGTT--GTGATACGTATTTAACAATAGCGCTCG-CGGTGGCATTAATTGA 74014 Query 139954 ATCCAGCGAATCACCGCCTTCAATAACAACACAAGAGCTAAACTGACGTGTCGGAGTTCT 140013 || || |||| ||| ||||| | ||||| || |||||||| || || ||||| | Sbjct 74015 GTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGTTGGAGTGCG 74074 Query 140014 TACGCCCGCCATAATCGGAGTAGGTA 140039 || ||||||||||| || ||||||| Sbjct 74075 CACCCCCGCCATAATTGGCGTAGGTA 74100 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 137293 TTCCGCATAATATGAGTATAAGAACGAGAATGAATTGTTTCGCTGAATGTCCATGTTTGA 137352 || || |||||||| ||||| || || |||||||| || || |||| ||| |||| Sbjct 71957 TTGCGAATAATATGCGTATAGGAGCGCGAATGAATAGTCTCAGAAAATGACCAAGTTTCT 72016 Query 137353 ACCCATGTTTC-AAAGCCGACATCAGAGATCAACGGCGCAAATGCCAGAGCTGGAGCTCG 137411 ||||||||||| || | | || ||| || | || ||||||| | |||| || Sbjct 72017 ACCCATGTTTCTAATTCAGGGAT-AGAAATTAGAGGTAATAATGCCACATTTGGACTACG 72075 Query 137412 TCCTTGAATAGAATCAAGCAGTGTCTGATATTTTAAGTTATCGGTAAAAATACCCTTTTC 137471 ||||||||| || || | | || ||||||||||| ||| | |||| ||| ||||| Sbjct 72076 TCCTTGAATGGAGTCTAATAAGGTTTGATATTTTAAATTACTGATAAAGATATGTTTTTC 72135 Query 137472 ATGTTC 137477 |||||| Sbjct 72136 ATGTTC 72141 >seq3883 Length=158444 Score = 145 bits (160), Expect = 8e-30 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 52708 TACATAGCTTCAGTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAG 52767 ||||| | || |||||| || |||| ||| || || ||||| ||||| || | ||| Sbjct 116562 TACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAG 116503 Query 52768 TTAAAGCGAACAGCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCT 52827 ||||| || || ||||||||||||||||| ||||| || ||||| || ||| ||| | | Sbjct 116502 TTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTT 116443 Query 52828 TCCATCGCTTCAAGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCT 52887 ||||| || || | || |||||||||| | ||||||||| || ||||||||||| ||| Sbjct 116442 TCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCT 116383 Query 52888 TCGAC 52892 || || Sbjct 116382 TCAAC 116378 >seq1913 Length=212763 Score = 134 bits (148), Expect = 1e-26 Identities = 267/393 (68%), Gaps = 2/393 (1%) Strand=Plus/Minus Query 36645 ACTTCTTTCTGTTTGCCTTCGTTAAATCCGCGAGTACTAGGATTCCCCAAATAACCACAG 36704 ||||||| |||||| || | |||||| | || | || |||||||||| ||||| Sbjct 33548 ACTTCTTCCTGTTTACCCGCATTAAATGGTCTAGCATCGGGGCTCCCCAAATAGCCACAT 33489 Query 36705 GTTCGACGAACAACAGACATCTTTTTGGTGTCCATTTCACCACATTTCGGACAACGGAAA 36764 |||||| ||| |||| || ||| || | |||||| | |||||| ||| Sbjct 33488 ACACGACGAGTAACCGACACTTTACTGGAATCGTGATTACCACAACTTGGACAAGTGAAC 33429 Query 36765 CCGTGTTCAGTTGGTGTAAATTCACCATGGTATTCACAAGAAAAACATTGATCAACTGGC 36824 || | ||| | |||||||||| || |||| | |||| | ||||| || Sbjct 33428 CCTTTACTAGTACAAGAAAATTCACCACTATAACCACATTCATAACACTCATCAATAGGG 33369 Query 36825 GTATTGGTACCAAAATAATCCAGATTTTCGATTGC-ATAATCCCATACTTGTTCTAATGC 36883 ||||| || ||| ||||| | | || || |||||||||||| | |||||| || Sbjct 33368 GTATTCGTCCCATAATAAGGAACGCGG-CTATAGCTATAATCCCATACATCTTCTAACGC 33310 Query 36884 TTCGATATTATCTTTCATATTAGGGAGTTCAACATAAGAAATATGTCCACCCTTTGCAAT 36943 || | ||||| | |||||||||| |||| ||||| | || ||||| ||||| || Sbjct 33309 TTTAAGATTATGCTGCATATTAGGGTATTCACCATAACAGATGAAGCCACCATTTGCGAT 33250 Query 36944 CCAGTGATAATCTTTTTCAAAATCAATTTTTTCAAACGGCGTTACTTTTTTACGGACGTC 37003 | |||| |||||||||| || | ||||| | | || |||||||| || || Sbjct 33249 CATAGGATAGGCTTTTTCAAACTCTAATTTTTGATAAGGGTCAACTTTTTTCTCCACATC 33190 Query 37004 AAGATGGAAACTATTTGTGTACCAGCCTTTATC 37036 |||||||||||||| || || | |||||||| Sbjct 33189 CAGATGGAAACTATTCGTATAGTAACCTTTATC 33157 >seq3995 Length=10512 Score = 120 bits (132), Expect = 3e-22 Identities = 71/74 (96%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8952 AATGGCGTCCCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 9011 Query 66461 CCAGCTGAGCTAAG 66474 |||||||||||||| Sbjct 9012 CCAGCTGAGCTAAG 9025 >seq2331 Length=68774 Score = 109 bits (120), Expect = 6e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 52720 GTAAATGTACGAGAAATTACATCACGCTGTTGTTCTTTGGTCAGGGAGTTAAAGCGAACA 52779 ||||| ||||||| ||| || ||||| ||||||||| || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 52780 GCATAACCAGAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGCTTCA 52839 ||||||||||||||||| ||||| || || ||||| ||| ||||| || | ||| || Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 52840 AGCAACATTTCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGAC 52892 ||| |||||||| | ||| || || || | ||| || || ||||| || Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTAC 23813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 522078919520040