Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031030.1 Length=170788 Score E Sequences producing significant alignments: (Bits) Value seq2372 156 5e-33 seq1913 120 3e-22 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 156 bits (172), Expect = 5e-33 Identities = 317/462 (69%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 139466 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 139525 ||| || | ||| | ||| || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 139526 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 139585 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 139586 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 139645 || || || || || || | || || || ||||| ||||| || || || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 139646 TTTCCAAAAAGGAATAACACCAGTATG--ACGTACTTCACCCATGCCAATTTTAGAACCT 139703 || |||| |||||| ||||||||| ||| |||| || || || | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACG--CTTCGCCACCGCGGATCGGACTTCCT 73928 Query 139704 TCAGCACGAATCATACCAACATTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACA 139763 ||||| ||| |||| ||||||| |||||||||||||||| || | |||| |||| Sbjct 73929 AAGGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACA 73988 Query 139764 ATTGAA---GCGGAAGCCTTATTGATAGACTTCAATGAATCTCCT-GC-CTCAATAACGA 139818 || | |||| || ||| || || | ||| || | || | || |||||| | | Sbjct 73989 ATAGCGCTCGCGGTGGCATTA---ATTGAGT-CAA-GACTATCATCGCACTCAATCAATA 74043 Query 139819 CGCATGAACTAAACTGCCGAGTTGGAGTACGACAGCCAGCCATAATAGGAGTTGGTAATG 139878 | || ||||||||||| ||||||||||| || || |||||||| || || |||| | Sbjct 74044 CACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGG 74103 Query 139879 AAATCTGTCGAGTAGATACCGCTTCATAAAAACGAATAACGT 139920 |||| | || || | ||| ||||||||||| ||| || Sbjct 74104 AAATTTTAAAGGTGGAAATCGCATCATAAAAACGTTTAATGT 74145 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/197 (72%), Gaps = 11/197 (6%) Strand=Plus/Plus Query 136479 AATAATATATTGGGTGCCTTTAAGGTGAAGCTGCTCATCACGTGCAATGAACTTCATAAT 136538 ||| ||| |||| || || |||||||||| ||||| || ||||| | || ||||| Sbjct 71593 AATCATAAATTGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAAT 71652 Query 136539 CTTGGCATTACCTTCCATAATTTCCATGTTCTTATGG--AAGTTAAAGGTACATGCGAAA 136596 |||||||| |||||||| | ||| |||| || ||| ||| | || || ||| Sbjct 71653 TTTGGCATTTCCTTCCATTAATTCGC-GTTC----GGCAAAGGCAAACGAGCAGGC-AAA 71706 Query 136597 GATA-CATAAAAACGAATAGCTTCCAATGCGTTGA-TTACATGCAAACAGAGGTAAAGAG 136654 | || ||||||| ||||||||||| | || |||| ||| |||||||| ||||| Sbjct 71707 GCTAACATAAAATCGAATAGCTTCAAGCGCATTGACGCTCAT-TAAACAGAGATAAAGTT 71765 Query 136655 ATTTCATTAGCTCACGC 136671 |||| ||| |||||| Sbjct 71766 TTTTCTTTAATTCACGC 71782 >seq1913 Length=212763 Score = 120 bits (132), Expect = 3e-22 Identities = 390/594 (66%), Gaps = 15/594 (3%) Strand=Plus/Minus Query 41703 ACCAAATGTAATTGTTACAAAAGGCGTTTGCCCGTTTGAACTAAAAAGAGTATTTACTTC 41762 ||||||| || ||| |||||||| || || || || | | || || ||||| ||||| Sbjct 32340 ACCAAATCCAAATGTAACAAAAGGGGTCTGTCCATTCGCAGTATGTAGCGTATTGACTTC 32281 Query 41763 ATATTCATAAGCTTGGAATGCATCGTATACA-TCTTTTTCTGTTTTAGATTGAGCATAAT 41821 |||||| | | ||| |||||||| || ||| |||||||| || || | ||| || | Sbjct 32280 ATATTCTAACGATTGAAATGCATCATA-ACACTCTTTTTCAGTACGTGACTTAGCGTAGT 32222 Query 41822 TCAACGCATCAGCGATTTGCCATTTTTCTGC-ATCCTCAATATGTTTTGCATA--GGTGC 41878 | ||||| |||||||| | ||| || || | | ||||||| |||| | | Sbjct 32221 TTTCGATATCAGGAATTTGCCACTCTTCGGCTATAC-GACGATGTTTTTCATAACTTTTC 32163 Query 41879 GTTTAACATAAGGAGAAAGTACTTTATCTACATTAGCAAAAGTCGTTCCGCCGTATTGAT 41938 | | ||| | || || |||| ||| | | | || || || || || || || Sbjct 32162 GAT--ACAAATTTAGCCAGAACTTCATCAATACGATTAATGGTGGTGCCACCATAAATAT 32105 Query 41939 GGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCGGTAGCAACTCCAATTGATTTAG 41998 || || || || || |||| ||||| | | ||||| ||| | ||||||||||| Sbjct 32104 GGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGCGGTGGCAGTTGAAATTGATTTAG 32045 Query 41999 GAGTTTCAATCTGTGCATTACCTAGCTTAAATCCGTTTTCAAGCATTCCTTTTAAATCTA 42058 | | |||||| | ||||| || | ||||| || || |||||||| | |||||| | Sbjct 32044 GCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTTGGTTAGCATTCCATCTAAATCAA 31985 Query 42059 CTAAACAGCAATT-AGTAAATGGAAGAGCAGGG-GAATAATCAATATCGTGGAAATGGAT 42116 || ||| || | | | |||| | |||| | |||||| | ||| || |||| || Sbjct 31984 TTAGCATGCAGTTAAACATAGGGAAAA--AGGGAGCATAATCCAGATCATGATAATGAAT 31927 Query 42117 AATTCCGCTTTCATGCGCTTTCATAATAAAAGACGGGACCATATTT---TTGGCAATGTG 42173 || | |||||||| | ||| || | |||| | || ||| || Sbjct 31926 TTCACCACGATCATGCGCAATAGAAATTTCTTTAGGTAAGATATATTGCTTAGCATAATG 31867 Query 42174 TTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACACGAGAATCTTTATT 42233 ||||| || ||||| || | | || || ||||| |||| ||| | ||||||||| Sbjct 31866 TTTAGCAACGATACCTGCTAATAAATCGCGCTGAGTAGGAATAACTTTACTATCTTTATT 31807 Query 42234 AGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAATCCTTCAATTTC 42287 |||||| ||||| |||| | ||||| ||| | ||| || |||| ||| || Sbjct 31806 AGCATTTTCGTTCAAAATTGCCATATTACTTTGTTCAATTAACCCTTTAATCTC 31753 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 69900 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GC 69958 |||||||||| | | ||||||||| | ||||||||| ||||||| |||||||||| || Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 69959 CATTATACGATATCCGCA 69976 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546355632474720