Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq418 194 2e-44 seq1274 120 4e-22 >seq418 Length=3833963 Score = 194 bits (214), Expect = 2e-44 Identities = 224/302 (74%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 77037 GAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT 77096 |||||| || || ||||||| ||| || ||||| |||| ||| | | || || || Sbjct 2670178 GAACCATTATTTGCTATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTC 2670119 Query 77097 AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG 77156 | | ||| | | ||||||||| || | |||||| ||||||||||| ||||| | | Sbjct 2670118 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 2670059 Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 ||||||||||||||||||||||| | ||||||||| ||||| || ||||| |||||||| Sbjct 2670058 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAT 2669999 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || ||||||||||| || | |||||| |||||| | |||||| | ||||| ||| Sbjct 2669998 GCCGTTGGCATAGGGGCGATTAATAAAGAATTTCTAACTCCATGTTTAGCAATTTTTTCT 2669939 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGA 77336 || ||| | |||| | ||| | || | || ||||| ||| | ||| ||||||| | Sbjct 2669938 TTCAGAATTGTCCAGTTCCATAAATTAGTTGGAGTAACATTCCACATATCATATTGTAAA 2669879 Query 77337 AT 77338 || Sbjct 2669878 AT 2669877 Score = 143 bits (158), Expect = 4e-29 Identities = 217/308 (70%), Gaps = 8/308 (3%) Strand=Plus/Minus Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 |||||||||||||||| | ||| || | ||||| | |||||||||||||| |||||| | Sbjct 2668758 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 2668699 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | |||| |||| |||||| ||||| ||||| | ||||| || || ||||| || | Sbjct 2668698 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 2668639 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 |||| | ||||||||| | ||| |||||| ||| ||| |||| || | || | Sbjct 2668638 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTGCCTC 2668579 Query 78256 TTGCGCGAATATTACTAATGGATAT----CCCTATTCCTCCTGCCATCTTAGATATTAGA 78311 |||| |||||| |||| | || || || || || || || || || Sbjct 2668578 TTGCTCGAATA----CAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATAAGT 2668523 Query 78312 GCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGA 78371 || || | ||| |||||||| || || || ||||| || ||||| |||| | || | | Sbjct 2668522 GCACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAA 2668463 Query 78372 AAACAGCT 78379 ||||| || Sbjct 2668462 AAACAACT 2668455 Score = 134 bits (148), Expect = 2e-26 Identities = 136/176 (77%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| || |||||||||||| |||||||||||| | ||||| |||||| ||| Sbjct 2669016 GTATAGAGAGCTTCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGA 2668957 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || ||||| |||||| || ||||||||||||||| ||||||||||||||| Sbjct 2668956 CACATTAAAGACCATACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCCAT 2668897 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT--ATTCTTTTTA 78086 | |||| |||| |||| | ||||| |||||| || ||||| ||| || ||| Sbjct 2668896 AAAGCATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 2668841 Score = 118 bits (130), Expect = 1e-21 Identities = 265/394 (67%), Gaps = 8/394 (2%) Strand=Plus/Minus Query 77523 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTA 77582 ||||| ||||| |||||| | ||| || |||| ||||| ||| ||||||||||| Sbjct 2669505 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCATGAACCGGATAATAATTC 2669446 Query 77583 ATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGA 77642 | || |||||||| | | ||| | | ||| | ||| || | ||||| | Sbjct 2669445 ACATCGATAATTTTGTCTAAATTACAAGTAACAATTTTTGTTACTTTTCGCAGTTTTTCA 2669386 Query 77643 AAATCAAATCTTCCAT--CTATA----ACAAACATGTTCAAAGCTATAGATGCTAGATTA 77696 ||||||||| | || || | ||||||||||||| || || || |||| ||| Sbjct 2669385 AAATCAAATGTCTGATTACTGGAGTTTACAAACATGTTCACTGCGATTGAAGCTAAATTG 2669326 Query 77697 CAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACAT 77756 || || || | |||| | ||| |||||||| || || ||||| | |||||| | | Sbjct 2669325 CATACAGCGATTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAATTACTGCTT 2669266 Query 77757 TTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAAT 77815 ||||| || || | |||||| || || || ||| | |||| || |||||||| || Sbjct 2669265 TTGATTGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGA-TCTTTATAAAGCAT 2669207 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 77875 | ||||| || ||||||| || || | | ||||| | |||| | |||| |||| Sbjct 2669206 GTAAGGAGTTCCTGTTTCAACTTGAGAAACAAGAATAGCTGTCCATAAATCTCTCGCTTG 2669147 Query 77876 TATCATAGATTTGTATCGCCTCTCTCTTTCATAT 77909 ||| | ||| |||| |||| | |||||| Sbjct 2669146 AATCTGACGTTTATATCTTTTCTCATTCTCATAT 2669113 Score = 109 bits (120), Expect = 8e-19 Identities = 183/265 (69%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||||||||| || || ||| | ||| ||| | || ||||||||||| ||||| Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 | ||| || | | |||||| ||||| |||||| || || || |||||| Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGAATG 2668264 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTC 78557 | || || || | ||| ||||| || || ||||||||||| || | |||||| Sbjct 2668263 GCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTTT 2668204 Query 78558 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCG 78617 || || || | |||| | || ||||||||||| || || || ||||||||| || Sbjct 2668203 AATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATCA 2668144 Query 78618 TAAATAATAACAGAATTTAGTTTAT 78642 ||||| || ||||||||| |||| Sbjct 2668143 TAAATTATTGCAGAATTTAACTTAT 2668119 Score = 95.1 bits (104), Expect = 2e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 ||| |||||||| | |||| | |||| ||||||||||| || || ||||| || || Sbjct 2669751 ATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAACTAGCCTCTAATGCACCATA 2669692 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 ||| | ||| || || || | |||| || | ||||||||| ||| ||||||||||| Sbjct 2669691 ATATAATGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAACGGATA 2669632 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 | | | || || |||||||| | ||||||| |||||| || Sbjct 2669631 TCGCATTAAAAGGAATGCATCTGCAAGACCCTGAATTCCAATCCC 2669587 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 ||||||| ||| |||||||| || || |||||||||| || ||||||||||||| | Sbjct 2667926 CACTAAAGCTTTTCTTTGTTTCTTTATGAAGATTAGATATTGCAATTCTTGCAGCTAATA 2667867 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 | |||||||| ||||||| ||||| ||| || || |||| || || | | | |||| Sbjct 2667866 TCGCATAATCTGGATGTTTAGTAGTCATAGTTGCAGCAGTTTCAGCTGCAAGATTGTCTA 2667807 Query 78862 ACTCTATAGTTGTGACCCCATTATATA 78888 | || | || || || || ||||| Sbjct 2667806 ATTCAACGGTGGTTACACCTGAATATA 2667780 >seq1274 Length=440581 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 47937 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAT 47996 ||| ||| |||| | | |||||||||| || | |||||| ||||| ||||| |||||| Sbjct 123691 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 123750 Query 47997 CTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAAC 48056 ||| | | ||| ||||||||||| | || ||| |||| ||| ||||| | ||| Sbjct 123751 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAAT 123810 Query 48057 TCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGA 48116 |||||||| || |||| ||||| || || ||||| ||| || | |||| Sbjct 123811 TCTTGTTCAATTTTGACGGCATCTTTAATAATTGATGTGACCCGATCGCAAGATGGTTTT 123870 Query 48117 TACAACAAATGTTTAAACATTAAACATGCAAAATCACAATG 48157 | | | |||||| ||||| |||||||| ||||||||||| Sbjct 123871 TGTACAATATGTTTGAACATCAAACATGCGAAATCACAATG 123911 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 48625 CTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 |||| || | ||| ||||| ||| | |||||||||||||| || |||||||||||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 ||| || ||| |||| || || || | ||| |||||| |||||||| Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTTT 124852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694620529201760