Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq418 187 4e-42 seq1274 131 2e-25 >seq418 Length=3833963 Score = 187 bits (206), Expect = 4e-42 Identities = 214/288 (74%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 75646 TATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAG 75705 ||||||| ||| || || || |||| ||| | | ||| || || | | ||| | | Sbjct 2670164 TATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTCAGATCTCGTAATAA 2670105 Query 75706 ATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGT 75765 ||||||||| || | |||||| ||||||||||| ||||||| | |||||||||||||| Sbjct 2670104 ATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCATAAATATTACTGGT 2670045 Query 75766 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGG 75825 ||||||||| | ||||||||| ||||| || ||||| ||||| || || || |||||||| Sbjct 2670044 ATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGATGCCGTTGGCATAGG 2669985 Query 75826 TGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCA 75885 || | |||||| |||||| | |||||| | ||||| ||||| ||| | |||| Sbjct 2669984 GGCGATTAATAAAGAATTTCTAACTCCATGTTTAGCAATTTTTTCTTTCAGAATTGTCCA 2669925 Query 75886 ATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 | ||| | || | ||| ||||| ||| | ||| ||||||| ||| Sbjct 2669924 GTTCCATAAATTAGTTGGAGTAACATTCCACATATCATATTGTAAAAT 2669877 Score = 152 bits (168), Expect = 7e-32 Identities = 216/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 76671 TATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 76730 |||||||||||||||||| || || | ||||| | |||||||||||||| |||||| | Sbjct 2668758 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 2668699 Query 76731 CCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAA 76790 | | | || |||| |||||| ||||| ||||| | ||||| || || ||||| || | Sbjct 2668698 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 2668639 Query 76791 CTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCAC 76850 |||| | ||||||||| | || |||||| |||| ||| |||| || | || | Sbjct 2668638 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTGCCTC 2668579 Query 76851 ATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 ||| |||||| | | | || || || || || || ||| || || |||| Sbjct 2668578 TTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATAAGTGCAC 2668519 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | | ||| ||||| ||||| || || ||||| |||||||| |||| | || | ||||| Sbjct 2668518 ATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAAAAC 2668459 Query 76971 AGCT 76974 | || Sbjct 2668458 AACT 2668455 Score = 134 bits (148), Expect = 2e-26 Identities = 137/178 (77%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 76506 GTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCG 76565 ||||||| | |||||||||||| |||||||||||| | ||||||| |||||| | Sbjct 2669018 GTGTATAGAGAGCTTCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTG 2668959 Query 76566 GACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCC 76625 ||||||| || ||||| |||||| || ||| ||||||||||| ||||||||||||| Sbjct 2668958 GACACATTAAAGACCATACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCC 2668899 Query 76626 ATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT--ATTCTTTTTA 76681 ||| |||| |||| |||| | |||| |||||| || ||||| ||| || ||| Sbjct 2668898 ATAAAGCATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 2668841 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||| ||||| || || || | || | |||| ||||| ||||| |||||||| ||||| || Sbjct 2669751 ATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAACTAGCCTCTAATGCACCATA 2669692 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||| | ||| || || || | ||||||| | ||| ||||| ||| ||||| ||||| Sbjct 2669691 ATATAATGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAACGGATA 2669632 Query 76078 ATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACC 76122 | | | || ||||||||||| || ||||||| |||||| || Sbjct 2669631 TCGCATTAAAAGGAATGCATCTGCAAGACCCTGAATTCCAATCCC 2669587 Score = 93.3 bits (102), Expect = 6e-14 Identities = 176/259 (68%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||||||||| || || ||| | ||| ||| | || ||||||||||| || || Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 | ||| || | | |||||| ||||| ||| || || ||||| |||||| Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGAATG 2668264 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 | || || || | ||| ||||| || || |||| ||| ||| || | |||||| Sbjct 2668263 GCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTTT 2668204 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 || || || | |||| | || ||||||||||| || || || ||||||||| || Sbjct 2668203 AATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATCA 2668144 Query 77213 TAAATAATAACCGAATTTA 77231 ||||| || | ||||||| Sbjct 2668143 TAAATTATTGCAGAATTTA 2668125 >seq1274 Length=440581 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 46889 TATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAG 46948 ||||| | | ||||||||| || || | ||||||||||| || | ||||| || | Sbjct 124446 TATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGG 124505 Query 46949 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTT 47008 | | ||||| || || ||||| | ||| || || | ||||| || || |||||||| Sbjct 124506 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGTT 124565 Query 47009 CAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTA 47067 | ||||| ||||||||| || ||||||||| ||| ||||| ||||| || ||||| Sbjct 124566 C-GACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGAT 124624 Query 47068 ATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 || |||| ||| ||||| |||||| | |||||||||| Sbjct 124625 ATGAAATGTTTCTCATCACTAGTCAAATGATTCCAGTCA 124663 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 46426 TTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATAC 46485 ||| ||| |||| | | |||||||||| || | |||||| ||||| ||||| ||||| Sbjct 123691 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 123750 Query 46486 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAAC 46545 ||| | | ||| ||||||||||| | || || |||| ||| ||||| | ||| Sbjct 123751 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAAT 123810 Query 46546 TCTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA 46605 ||||||||||| |||| ||||| || || ||||| || || | |||| Sbjct 123811 TCTTGTTCAATTTTGACGGCATCTTTAATAATTGATGTGACCCGATCGCAAGATGGTTTT 123870 Query 46606 TGCATCAAATGTTTAAACATTAAACATGCAAAATCACAATG 46646 || | | |||||| ||||| |||||||| ||||||||||| Sbjct 123871 TGTACAATATGTTTGAACATCAAACATGCGAAATCACAATG 123911 Score = 89.7 bits (98), Expect = 7e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 |||| || | ||| ||||| ||| | ||||| ||||| || || |||||||||||||| | Sbjct 124742 CTTTAGAAAGATCCACTTCCTCAACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 124801 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTA 47233 ||| || ||| | |||| || ||||| | ||| |||||| |||||||| | |||| Sbjct 124802 GCCAAATGTCAGGCCATTGAATAGGAAAGACAACGAATCTACGTGGATTTTCTTTCAGTA 124861 Query 47234 TAGGTTC 47240 ||||| Sbjct 124862 ATGGTTC 124868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712884859970880