Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031042.1 Length=111325 Score E Sequences producing significant alignments: (Bits) Value seq3883 134 1e-26 seq1913 134 1e-26 seq2331 120 2e-22 >seq3883 Length=158444 Score = 134 bits (148), Expect = 1e-26 Identities = 140/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 110489 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 110548 ||||||| | |||||||| || ||| |||| ||||| || ||||| || ||| | | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 110549 CGTTAAATCGAACAGCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGT 110608 |||||| || || || || ||||| ||||| ||||||||||| || || |||||||| | Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 110609 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCAC 110668 || | |||||| || | |||||| |||| || || ||||| ||||||||||||| Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 110669 CTTC 110672 |||| Sbjct 116384 CTTC 116381 >seq1913 Length=212763 Score = 134 bits (148), Expect = 1e-26 Identities = 405/614 (66%), Gaps = 20/614 (3%) Strand=Plus/Plus Query 22411 TAAAATTGGTAATGCGAATATTGAAACTCCTAAATCCATAACTACTGCGTGTGCGATTAC 22470 |||||| || ||||| | |||||| | |||||||| || | ||||| || | || Sbjct 32016 TAAAATGGGAAATGCTGAAATTGAACCGCCTAAATCAATTTCAACTGCCACCGCTGTAAC 32075 Query 22471 TGCTCAGATTATTGCTCAAGTATCAGGCGCTCAGTATGGTGGTACTTCCATTGATCGTAT 22530 || |||||||| || |||||| | || | |||||||| || ||||| ||||||| Sbjct 32076 CGCACAGATTATAGCCCAAGTAGCCAGCCATATTTATGGTGGCACCACCATTAATCGTAT 32135 Query 22531 TGATGAAGTTCTAGCTCCGTATGTTAGGAAGTCCTACAATAAACATCTGGGGCGTGGCCT 22590 |||||||||||| ||| | ||| ||| || | ||||||| | | | ||| Sbjct 32136 TGATGAAGTTCTGGCTAAATTTGTATCGAAAAGTTATGAAAAACATC-GTCGTATAGCCG 32194 Query 22591 ACG-TTGGCTTAAGGATGAGA--GAAAAGCTGCTGTATATGCTACTGAACTTACTGAAAA 22647 | | |||| | ||| | ||||| || |||| || ||||||||| Sbjct 32195 AAGAGTGGCAAATTCCTGATATCGAAAA--------CTACGCTAAGTCACGTACTGAAAA 32246 Query 22648 AGAATGTTATGATGCATTCCAGGCCCTAGAGTATGAGACTAATTCGTTATTTAACTCTAA 22707 ||| |||||||||||||| || | |||| ||||| ||| || || || | || Sbjct 32247 AGAGTGTTATGATGCATTTCAATCGTTAGAATATGAAGTCAATACGCTACATACTGCGAA 32306 Query 22708 TGGGCAGACTCCTTTTGTTACTCTGGGCTTTGGTTTAGG-ACAAGAATGGGAAGAAAGGA 22766 ||| ||||| ||||||||||| | || ||||||||||| || || |||||| | | Sbjct 32307 TGGACAGACCCCTTTTGTTACATTTGGATTTGGTTTAGGCACCAG-TTGGGAATCACGCT 32365 Query 22767 TGATTCAGAAAGCTATTCTTCAAAATCGTCTTAAAGGACTAGGGGCAGCAGGGTCGACAC 22826 | ||||| || | || | | ||| || || |||| | || Sbjct 32366 TAATTCAAGAATCGATCTTACGTGTGCGTATTGTTGGTTTAGGAAAAAATCATAAAACGG 32425 Query 22827 CTATCTTTCCTAAATTGATATTTTCAGTTAAGGA-GGGGTTAAACAAAAATCCTGGTGAT 22885 | | ||||||||||| | ||| | | || || |||||||| | | || || ||| Sbjct 32426 CAGTTTTTCCTAAATTAGTCTTTGCGATCAAAGATGGGGTTAATC-ATAAGCCAACAGAT 32484 Query 22886 CCTAATTATGATATAAAACAGCTAGCACTAGAATGTTCTGCTACACGTATGTACCCAGAC 22945 | |||||| || ||||| ||||| |||| ||| | |||| ||| ||||| || || Sbjct 32485 CAAAATTATACGATTAAACAATTAGCATTAGAGTGTGCCGCTAAACGAATGTATCCTGA- 32543 Query 22946 TAT--TTAAGCTATGAGAAGGTTGTAGCTGTTACTGGCGATTTTAAAGCCCCTATGGGTT 23003 ||| |||| ||||| | || || || || || |||||| |||| ||||| | Sbjct 32544 TATCCTTAA-TTATGATCAAGTGGTCAAGGTAACAGGATCATTTAAAACCCCAATGGGCT 32602 Query 23004 GTCGTAGTTTTTTA 23017 |||||||||| ||| Sbjct 32603 GTCGTAGTTTCTTA 32616 >seq2331 Length=68774 Score = 120 bits (132), Expect = 2e-22 Identities = 131/172 (76%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 110503 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAATCGAACA 110562 ||||| |||||| ||||||||| |||||||| | || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 110563 GCGTAGCCAGAGACACGGATAGTTAATTGAGGGTATTTTTCAGGGTGTTT--CTGTGCAT 110620 || || ||||| ||||| ||||||||||| ||||| |||||||||||||| | | | | Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 110621 CCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCACCTTC 110672 | || | | ||||||| ||| ||||| ||||||| ||| || |||||||| Sbjct 23761 TCTAACGTT--TCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356091073083914