Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq911 165 1e-35 >seq911 Length=74078 Score = 165 bits (182), Expect = 1e-35 Identities = 222/309 (72%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 99463 TTAGCATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGTTGTTAAAG 99522 ||| |||| |||||||| ||| |||||| || || | |||| || || | ||| Sbjct 47487 TTAACATGCAACAATATCTGGCTTTAATGCAAAAAATTCTTGATGACGGTGTGGCGAAAT 47428 Query 99523 GCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGG 99582 || || ||||| ||| || || || | ||||| ||||||||||| ||||||||| Sbjct 47427 CAGATCGCACTGGGGTTGGCACTTTATCCATTTTTGGTCATCAAATGCGCTTTAATTTGC 47368 Query 99583 CTGAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAAC 99642 |||| ||||| || ||||| || || ||||| || |||||||||||||||||| Sbjct 47367 AGCAAGGCTTTCCGCTCGTCACCACAAAAAAATGTCATCTACGTTCTATTATTCATGAAT 47308 Query 99643 TCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTA 99702 | |||||||| | ||||| || ||||||| || || | || || ||||||| Sbjct 47307 TACTTTGGTTTTTAAAAGGCGAAACCAATATTGCTTATCTACATGACAATAATGTCACTA 47248 Query 99703 TCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGC 99762 ||||| ||||||||| | | |||||||| ||||||| || || || || || |||| Sbjct 47247 TCTGGGATGAGTGGGCCGATAAAAACGGTGATCTAGGACCCGTTTATGGTAAACAATGGC 47188 Query 99763 GGTCTTGGC 99771 | |||||| Sbjct 47187 GTGCTTGGC 47179 Score = 140 bits (154), Expect = 5e-28 Identities = 203/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 100197 GACGTGTTCTTAGGTGTGCCGTTCAATATCGCGTCGTACGCTCTGCTGGTTCACATGTTT 100256 || ||||| ||||| | || || ||||| || |||||| || | || || ||| | Sbjct 46978 GATGTGTTTTTAGGCCTACCTTTTAATATTGCTAGCTACGCTTTGTTAGTACATATGATA 46919 Query 100257 GCACAACAAGCCAACATGGCCGTGGGCGACTTCGTCTGGACGGGTGGTGACGTACATCTG 100316 || || ||| | |||| || ||||| || || ||||| |||||||| ||||| Sbjct 46918 GCGCAGCAATGTGATTTGGCGGTAGGCGATTTTGTTTGGACTGGTGGTGATACCCATCTT 46859 Query 100317 TATTCCAACCATCTGGAACAGACACGTACTCAGCTAGGACGCACTCCGCGCACATTACCT 100376 ||| |||||||| ||||||| |||| | || | | || || || ||| || | ||| Sbjct 46858 TATGCCAACCATATGGAACAAACACATTTACAATTGAGTCGTACGCCACGCGCACTCCCT 46799 Query 100377 AAATTGGTTATCAACCGTAAGCCTGACTCTATCTTCGACTATAAGTTTGAAGACTTCGAG 100436 || || || || || || || || | || || || || || ||||||||||| ||| Sbjct 46798 AAGTTAGTGATTAAGCGCAAACCAAATTCGATTTTTGATTACTGTTTTGAAGACTTTGAG 46739 Query 100437 ATTGAGGACTACGAGCCTTACCCCGCCATTAAAGCGCCGGTGGCGAT 100483 || |||||||| || || || || |||||||| || ||||| ||||| Sbjct 46738 ATCGAGGACTATGATCCGTATCCTGCCATTAAGGCACCGGTAGCGAT 46692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 734224177052040