Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031045.1 Length=157855 Score E Sequences producing significant alignments: (Bits) Value seq916 104 2e-17 seq2372 93.3 4e-14 >seq916 Length=289624 Score = 104 bits (114), Expect = 2e-17 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 19041 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 19099 |||||| ||||||||| ||| |||||||||||||||||||||||||||| |||||||||| Sbjct 161622 GGCCCCTTAGCTCAGTTGGTCAGAGCAGTCGACTCATAATCGATTGGTCACTGGTTCAAG 161563 Query 19100 TCCAGCCAGGGTCACCACTAAA 19121 ||||| ||| ||||||| || Sbjct 161562 TCCAGTAGGGGCCACCACTTAA 161541 >seq2372 Length=84335 Score = 93.3 bits (102), Expect = 4e-14 Identities = 266/406 (66%), Gaps = 10/406 (2%) Strand=Plus/Plus Query 91538 TTAATCTGAATCCCATAGTCGATACGGCGTTCACGGTTCTCTTCCAATCCACGGTTGTTT 91597 ||||| || | |||||| || | | |||| | || || ||||| | |||||||| || Sbjct 73701 TTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTG 73760 Query 91598 TTGAGAACAACGACATCATCAAATTGATAATGCCAGATGGGA--ACATAGCATGTTGCCG 91655 || || | | | || | || ||||||| | ||| | ||| | ||||||| Sbjct 73761 CGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACC--GTTGCCG 73818 Query 91656 ATCCACCACGGATACCGCCTTGAGAGCAAGACTTCAGGGCACCAGTC---AAATACTTGA 91712 || || || | ||||||||||| || || |||| || | || || ||||| Sbjct 73819 CCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCA---CAGCTGTTTGGAAGTACTTAT 73875 Query 91713 TGAATGGAACCAGACCTGTATGGACCATTTCCCCTTTACGGATAGGGCTACCGATGCCAC 91772 ||||||| ||| ||||||| | ||| || ||||| || || || | | ||| Sbjct 73876 AAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCAC 73935 Query 91773 GAATTGCCCCAACATCGAATCCGATGCCAGCACGTTTGGAAACATAATCCACGATGCTTT 91832 | || || ||| | || || ||||| |||| || || || | || || Sbjct 73936 GGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAATAGCGC 73995 Query 91833 TCGCAGTGGCATTAATTGAGTCCAATGTGTCACCAGTTTTGATCAATACACAAGAGCTGA 91892 |||| ||||||||||||||||| | | ||| | | ||||||||||| || || | Sbjct 73996 TCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAA 74055 Query 91893 ACTGTCGGGTCGGGGTGCGGACGCCGGACATAATAGGTGTTGGAAG 91938 |||| || || || ||||| || || | |||||| || || || || Sbjct 74056 ACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAG 74101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504972908256600