Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq1913 127 5e-25 >seq1913 Length=212763 Score = 127 bits (140), Expect = 5e-25 Identities = 175/241 (73%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 26957 TGATCAGTCCATTTACGGGTTCGCAGACCGCCTTCAATGAACACCTTGCTG--CCTTTGC 27014 ||||| |||||| |||||| | | | | |||||||| | || ||| || || || Sbjct 142385 TGATCCTGCCATTTGCGGGTTTGTAAAGCACCTTCAATATAAAC-TTG-TGAACCACGGC 142442 Query 27015 GCAGGTATTCACCAGCGATTTCCGCCAGCTTGCCGAAGATGACAACGCGGTGCCATTCCG 27074 | | |||||||||||| ||||| || | || || || ||||||||||||||||| | Sbjct 142443 GTAAGTATTCACCAGCAATTTCTGCTAATCGACCAAAAATAACAACGCGGTGCCATTCAG 142502 Query 27075 TCTGCTCTTTTGGTTCGCCTGTGGCCTTATCTTTCCACTTTTCGGTTGTGGCAATGCTGA 27134 | | ||||| || ||||| || ||||||||||||| | || | || |||| || | Sbjct 142503 TGCGTTCTTTCGGCTCGCCGGTTTGCTTATCTTTCCACGTCTCCGACGTCGCAACACTAA 142562 Query 27135 GATTGGCAACTGCGCCACCTGACGGCATGTAGCGCACTTCTGGATCGTTGCCTAAATTAC 27194 ||| ||||||||||| ||| | || |||||||||||||| | |||||||||| Sbjct 142563 TGGTGGTCACTGCGCCACCATTCGGTAAATAACGCACTTCTGGATCTTGTCCTAAATTAC 142622 Query 27195 C 27195 | Sbjct 142623 C 142623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134007153185040