Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031057.1 Length=180219 Score E Sequences producing significant alignments: (Bits) Value seq2372 176 5e-39 seq2331 172 6e-38 seq1913 132 6e-26 seq3883 104 3e-17 >seq2372 Length=84335 Score = 176 bits (194), Expect = 5e-39 Identities = 338/495 (68%), Gaps = 15/495 (3%) Strand=Plus/Minus Query 43397 TACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCCAGTT---GCG 43453 |||||||||| |||||||| || ||||| ||||| || || |||||| |||| | | Sbjct 74100 TACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTT---AGTTCGTGTG 74044 Query 43454 TAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCT---GCGATCG 43510 || ||||||| | | |||| || | || | ||||| ||| | || || | Sbjct 74043 TATTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCC---ACCGCGAGCGCTATTG 73987 Query 43511 TGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCAATGG 43570 | || || | ||||||||||| || || || ||||||| || | || || || | | Sbjct 73986 TTAAATACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAG 73927 Query 43571 GTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAACATA 43630 | | ||||| ||||| ||||| | ||||| || || || || | || | Sbjct 73926 GAAGTCCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACT 73867 Query 43631 TTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACGTTGT 43690 | || ||||| || ||||||||||| ||||| || || || || || || |||||| | | Sbjct 73866 TCCAAACAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTAT 73807 Query 43691 ATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAAGGTG 43750 ||||||| | |||||||| ||||| |||||| | |||| || || ||| ||| Sbjct 73806 TTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTA 73747 Query 43751 TTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATGTATA 43810 |||| | || || | || || | |||||||| || || |||| | || ||||| Sbjct 73746 TTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATTAATGTACC 73687 Query 43811 AGCGTTTAATCAATAACGATTACATCACACTGTTCAGCCCTGACGTTGCAAATGATCGCC 43870 |||||||||| || ||||| | ||| | ||||| |||||| | || |||| | Sbjct 73686 AGCGTTTAATTAAAAACGAAAATATCTCGCTGTTTAGCCCTTCTGATGTCCCTGAT---C 73630 Query 43871 TGTATGATGCTTTCT 43885 |||||| ||||||| Sbjct 73629 TGTATGCGGCTTTCT 73615 Score = 91.5 bits (100), Expect = 2e-13 Identities = 224/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 45116 AGCCAATGTTCTTCGGTGAAGATACTGGG---GTTGCCCGATATGAAGAACAAAAACATC 45172 ||||||||||||| ||| || ||| | || || || ||||| | |||||| || Sbjct 72296 AGCCAATGTTCTTAGGTCAAC---CTGTGAACGTAGCACGCTATGATCAGCAAAAATATG 72240 Query 45173 GCGTATTCGAAACTTTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGG 45232 | || |||| |||| |||||||||||| || || || ||||| || ||||| |||| Sbjct 72239 AGATGTTTGAAAAATTGATTGAAAAACAACTCTCCTTTTTTTGGCGTCCAGAAGAGGTGG 72180 Query 45233 ATCTGTCGATCGACCGTATGCAGTATGCAAAAATGCCGGAACACGAGAAAATCATTTTTG 45292 || | | | || ||||| | ||| | | || ||||| || ||| || ||| Sbjct 72179 ATATTACTAAAGATCGTATTGATTATCAGCAGCTACCTGAACATGAAAAACATATCTTTA 72120 Query 45293 ATTCTAACCTGCAATATCAAACCCTGTTAGATACCATTCAGGGACGTGGCCCTAACCTGG 45352 ||| | ||||||||||| | ||||| ||||||| |||||| | || || ||| Sbjct 72119 TCAGTAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACGTAGTCCAAATGTGG 72060 Query 45353 CGTTTCTCCCGATTGCCTCTGATGTTTCAA-TGGAAACGTGGATCGAAACATGGGCTTTC 45411 | || | || | ||| || | || | ||||| ||| | ||||| ||| | || Sbjct 72059 CATTATTACCTCTAATTTCT-ATCCCTGAATTAGAAACATGGGTAGAAACTTGGTCATTT 72001 Query 45412 AGTGAAACAATTCATAGCCGCAGTTATACACACATT 45447 ||| || |||||| ||| ||||| || ||| Sbjct 72000 TCTGAGACTATTCATTCGCGCTCCTATACGCATATT 71965 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 45706 GTCAACGCTCTGGAAGCGATTCGTTTCTATGTCTCGTTTACCTTTACGTTCAACTTTGCC 45765 ||||| || || ||||| ||||| || ||||| ||| ||| |||| ||||||| Sbjct 71742 GTCAATGCGCTTGAAGCTATTCGATTTTATGTTAGCTTTGCCTGCTCGTTTGCCTTTGCC 71683 Query 45766 GAACAGGGCAAGATGGAAGGTAACGCAAAGATCATGCGTCTGATTGCCCGTGATGAAGCA 45825 |||| | |||||||| || || || || || ||||||||||| |||||||| Sbjct 71682 GAACGCGAATTAATGGAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAAGCT 71623 Query 45826 CTTCATCAGAAAGGTACTCAAAGCAAGA-TCCGAC-TCTGGCAGATGGGTAAAGATGACC 45883 ||||| | | ||||||||| | || | || | |||| ||| ||||||| | Sbjct 71622 CTTCACCTTACCGGTACTCAATTTATGATTAATACGTTACGCAG--TGGTGAAGATGATC 71565 Query 45884 CAGAAATGGCAGAAATCGC 45902 |||||||||| || ||||| Sbjct 71564 CAGAAATGGCTGATATCGC 71546 >seq2331 Length=68774 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 53372 TCGCAAAACGTGAAGTTGATATTGAGTTTCAACCGACTGTTAAAGTTGAAGGTGGACAGC 53431 ||| | | |||||||| |||||| | ||| ||| ||||||| ||||||||||| | Sbjct 23857 TCGAATATCGTGAAGTACCTATTGATGTCGCACCAACTATTAAAGTAGAAGGTGGACAAC 23798 Query 53432 ACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGCTGTGAAACATCCTGAGA 53491 || |||| |||||||| ||||||| ||||| | ||||| || || ||||| ||||| | Sbjct 23797 ACTTAAATGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTTAAACACCCTGAAA 23738 Query 53492 AGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCGCTTTAATGCACTGACTC 53551 | ||||| || ||||| || || ||||| |||||||| || || |||||| || | || | Sbjct 23737 ACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAATTCATTAACGC 23678 Query 53552 CAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAGCATGTAA 53601 |||||||||| || |||||||| || | || ||||| ||||| ||| Sbjct 23677 CAGAACAACAACGTGACGTTATTGCTCGTACTTTTACAACTAGCATTTAA 23628 >seq1913 Length=212763 Score = 132 bits (146), Expect = 6e-26 Identities = 365/542 (67%), Gaps = 18/542 (3%) Strand=Plus/Plus Query 155822 AACGAGAACGCGAACAAAGACGCAAGGGTTTTCCCGACACAGCGCGATCTGTTGGCGGGT 155881 ||||| || || || ||||| | ||| | || || ||||||||| | || || ||| Sbjct 31795 AACGAAAATGCTAATAAAGATAGTAAAGTTATTCCTACTCAGCGCGATTTATTAGCAGGT 31854 Query 155882 ATCGTAGCGAAACACTTCGC-ACGTAACCACATTCTACCAAAACACATCGTAGAAGCGCA 155940 ||||| || ||||| | || | | || | || |||| ||| | || ||||| Sbjct 31855 ATCGTTGCTAAACATTATGCTAAGCAAT-ATATCTTACCTAAAGAAATTTCTATTGCGCA 31913 Query 155941 TGATTCTGGTGATATCCATTATCATGATCTGGATTACAG-CCCGTTCACGCCATACACAA 155999 |||| |||||| || |||||||||||||||||||| ||| || | | || || Sbjct 31914 TGATCGTGGTGAAATTCATTATCATGATCTGGATTATGCTCCCTTTTTCCCTATGTTTAA 31973 Query 156000 ACTGCTGTCTGGTGGATTTGAAAGGTATGCTGGCTAATGGCTTCAAGATGGGTAACGCAG 156059 |||| || | ||||| | || ||||| | || || || || ||||| || || | Sbjct 31974 -CTGCATGCTAATTGATTTAGATGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCTG 32032 Query 156060 ACATCGAACCCCCGAAATCAATCGGTGTTGCGACTGCTCTTATGGCACAGATCACCGCAC 156119 | || ||||| || |||||||| ||| || ||| | | |||||||| | || | Sbjct 32033 AAATTGAACCGCCTAAATCAATTTCAACTGCCACCGCTGTAACCGCACAGATTATAGCCC 32092 Query 156120 AGATTGCTTCTCACCAGTACGGCGGGACAACCTTTGCAAACGTG--GATAAAGTGCTGGC 156177 | | || || || || || || ||| || || ||| ||| |||| ||||| Sbjct 32093 AAGTAGCCAGCCATATTTATGGTGGCACCACCATT--AATCGTATTGATGAAGTTCTGGC 32150 Query 156178 TCCGTATGCA--GAAATGACATATGAAAAGCATGTTAAGGAT-GCTAAAAAGTATAAAAT 156234 | | || | |||| | |||||||| ||| | | || || || ||| |||| Sbjct 32151 TAAATTTGTATCGAAAAGT--TATGAAAAACATCGTC-GTATAGCCGAAGAGTGGCAAAT 32207 Query 156235 TTCGTTAGATCGTACA-TATGCGATGGAAAAGACTGAAAAAGATGTGTT-TGATGCTTTC 156292 | | | | |||| | | || || | | | ||||||||||| ||||| |||||| || Sbjct 32208 TCC-TGATATCGAAAACTACGCTAAGTCACGTACTGAAAAAGA-GTGTTATGATGCATTT 32265 Query 156293 CAATCGTATGAATACGAAGTTAACACGCTGCATACTGCCAACGGACAAACACCTTTCGTT 156352 ||||||| ||||| ||||| || ||||| |||||||| || ||||| || ||||| ||| Sbjct 32266 CAATCGTTAGAATATGAAGTCAATACGCTACATACTGCGAATGGACAGACCCCTTTTGTT 32325 Query 156353 AC 156354 || Sbjct 32326 AC 32327 >seq3883 Length=158444 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 53415 AGTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACCCTGGAAGATGC 53474 |||||||||||| |||||||| || || || || || ||| ||||| | |||||| Sbjct 116377 AGTTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGC 116436 Query 53475 TGTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGTTATGCAGTTCG 53534 || || ||||||| ||||| ||||| ||||| || || ||||| |||||||| || || Sbjct 116437 AATGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACG 116496 Query 53535 CTTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACCTTTACGGAAAG 53594 ||||| | | ||| ||| ||||| ||||| || | | || ||||| || Sbjct 116497 TTTTAACTCTTTAACTAAAGAGCAACAAAAAGACGTCATTACTCGGACGTTTACTCAATC 116556 Query 53595 CATGTAATGTCTATTGA 53611 ||||||| || |||| Sbjct 116557 AATGTAATAACTGTTGA 116573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576532735397560