Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031085.1 Length=166634 Score E Sequences producing significant alignments: (Bits) Value seq2372 167 2e-36 seq2331 127 2e-24 seq1913 127 2e-24 seq3883 91.5 2e-13 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 167 bits (184), Expect = 2e-36 Identities = 320/465 (69%), Gaps = 20/465 (4%) Strand=Plus/Plus Query 140469 CATTAGATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACC 140528 ||||| | ||| | ||| || |||||||| | ||| || | ||| |||||||| | ||| Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 140529 TTTGTTATTTTTCAAAAC-AAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAG 140587 |||||| | || || ||| ||||| ||||| |||||||| | |||||| | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAG-TTTTCTACTTCTAAATGCCATAACGGATAAAATA 73809 Query 140588 CAGTAGCAGCGCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAAT 140647 | || || || || || || | || ||||| || || ||||| ||||| || || || | Sbjct 73810 CCGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGT 73869 Query 140648 GTTTCCAAAAAGGAATAACACCAGTATG--ACGTACTTCACCCATGCCAATCTTAGAACC 140705 || |||| |||||| ||||||||| ||| |||| || || ||| | || Sbjct 73870 ACTTATAAAATGGAATACAACCAGTATGGAACG--CTTCGCCACCGCGGATCGGACTTCC 73927 Query 140706 TTCGGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAAC 140765 | |||||| ||| |||| | ||||| |||||||||||||||| || | |||| ||| Sbjct 73928 TAAGGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAAC 73987 Query 140766 AATTGAA---GCGGAAGCCTTA-TTGAT---AGACTTTAATGAATCACCTGCCTCAATAA 140818 ||| | |||| || ||| |||| ||||| |||| | |||||| | Sbjct 73988 AATAGCGCTCGCGGTGGCATTAATTGAGTCAAGACT-------ATCATCGCACTCAATCA 74040 Query 140819 CAACACATGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTA 140878 ||||| ||||||||||| ||||| ||||| || || |||||||| || || |||| Sbjct 74041 ATACACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTA 74100 Query 140879 ATGAAATCTGTCGAGTAGATACTGCTTCATAAAAACGGATAACGT 140923 ||||| | || || | || ||||||||||| ||| || Sbjct 74101 GGGAAATTTTAAAGGTGGAAATCGCATCATAAAAACGTTTAATGT 74145 >seq2331 Length=68774 Score = 127 bits (140), Expect = 2e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 62758 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 62817 ||||| |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 62818 GCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 62877 ||||| || || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 62878 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAATTTTAA 62935 || | ||||||||||| | || || || || | |||||| |||||||| | ||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAA 23818 >seq1913 Length=212763 Score = 127 bits (140), Expect = 2e-24 Identities = 400/605 (66%), Gaps = 21/605 (3%) Strand=Plus/Minus Query 44049 GTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTGTCCGTTTGAACTAAAGAGAGTA 44108 || ||| ||||||| || ||| |||||||| || ||||| || | | || || ||| Sbjct 32348 GTGCCTAAACCAAATCCAAATGTAACAAAAGGGGTCTGTCCATTCGCAGTATGTAGCGTA 32289 Query 44109 TTTACTTCATATTCATAAGCTTGGAATGCATCGTATACA-TCTTTTTCTGTTTTAGATTG 44167 || ||||||||||| | | ||| |||||||| || ||| |||||||| || || | Sbjct 32288 TTGACTTCATATTCTAACGATTGAAATGCATCATA-ACACTCTTTTTCAGTACGTGACTT 32230 Query 44168 AGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGC-ATCCTCAATATGTTTTGCAT 44226 ||| || || ||||| |||||||| | ||| || || | | ||||||| ||| Sbjct 32229 AGCGTAGTTTTCGATATCAGGAATTTGCCACTCTTCGGCTATAC-GACGATGTTTTTCAT 32171 Query 44227 A--GGTGCGTTTAACATAAGGAGAAAGTACTTTATC--TAC-ATTCGCAAAAGTCGTTCC 44281 | | || | ||| | || || |||| ||| ||| ||| || || || || Sbjct 32170 AACTTTTCGAT--ACAAATTTAGCCAGAACTTCATCAATACGATT---AATGGTGGTGCC 32116 Query 44282 GCCATATTGATGGGAAGCAACTTGCGCAGTAATTTGTGCCATAATTGCAGTAGCAACACC 44341 ||||| |||| || ||||| || |||| ||||| | | || || ||| Sbjct 32115 ACCATAAATATGGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGCGGTGGCAGTTGA 32056 Query 44342 GATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTTCTCAAGCATTCC 44401 ||||||||||| | |||||| | ||||| || | ||||| || || |||||||| Sbjct 32055 AATTGATTTAGGCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTTGGTTAGCATTCC 31996 Query 44402 TTTTAAATCTACTAAACAGCAATT-AGTAAATGGAAGAGCAGGG-GAATAATCAATATCA 44459 | |||||| | || ||| || | | | |||| | |||| | |||||| | |||| Sbjct 31995 ATCTAAATCAATTAGCATGCAGTTAAACATAGGGAAAA--AGGGAGCATAATCCAGATCA 31938 Query 44460 TGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAGACGGGACCATATTT--- 44516 || ||||||| || | |||||||| | ||| || | |||| | Sbjct 31937 TGATAATGAATTTCACCACGATCATGCGCAATAGAAATTTCTTTAGGTAAGATATATTGC 31878 Query 44517 TTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACACGA 44576 || ||| ||||||| || ||||| || | | || || ||||| |||| ||| | Sbjct 31877 TTAGCATAATGTTTAGCAACGATACCTGCTAATAAATCGCGCTGAGTAGGAATAACTTTA 31818 Query 44577 GAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAATCCTTCA 44636 ||||||||||||||| ||||| |||| | ||||| ||| | ||| || |||| | Sbjct 31817 CTATCTTTATTAGCATTTTCGTTCAAAATTGCCATATTACTTTGTTCAATTAACCCTTTA 31758 Query 44637 ATTTC 44641 || || Sbjct 31757 ATCTC 31753 >seq3883 Length=158444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 62757 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 62816 |||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 62817 TGCATATCCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 62876 ||||| || || ||||| || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 62877 TTCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAA 62929 | | ||||||||| | ||||| || || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 71076 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAAT-GC 71134 |||||||||| | | ||||||||| | ||||||||| ||||||| |||||||||| || Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 71135 CATTATACGATATCCGCA 71152 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533063756158160