Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq2372 187 3e-42 seq2331 129 6e-25 >seq2372 Length=84335 Score = 187 bits (206), Expect = 3e-42 Identities = 346/506 (68%), Gaps = 14/506 (3%) Strand=Plus/Plus Query 141201 GGACTAAACAGAGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 141260 || |||||||| | ||| | || || ||||| ||||| | ||| | |||||||| Sbjct 73647 GGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATT 73706 Query 141261 TGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 141320 || || |||||||||||||| || | || ||||| || | ||| ||| || || Sbjct 73707 TGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGC 73766 Query 141321 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 141380 || | | |||||| ||||| || ||||| | ||||| | | || ||||| || || Sbjct 73767 ACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCG 73826 Query 141381 CGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAGAAAGGAATA 141440 || || || ||||| || |||||||| || ||||||||||||| || | || |||||| Sbjct 73827 CGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATA 73886 Query 141441 ACTCCAGTATGTTTGACTTCAC-----CGAATCCAATTTTTGAACCCTCGGCGCGAATCA 141495 |||||||| |||| | || ||| | || || ||| || ||| Sbjct 73887 CAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTT-----CCTAAGGCACGGATCT 73941 Query 141496 TGCCTGCATTAATACCAATACCTGCACGCTTACTGAT--GTATTTCGTAATTGATGCAGC 141553 | || |||||||| ||||| || | ||| | |||| |||||| ||| | || Sbjct 73942 TACCGGCATTAATGCCAATTCCAG--CGCGTTGTGATACGTATTTAACAATAGCGCTCGC 73999 Query 141554 AGCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAACTGAACTG 141613 | | |||||||| | |||||||||| | | ||||| | || || ||||| ||||| Sbjct 74000 GGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTG 74059 Query 141614 GCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTTTTTAGTAGA 141673 ||| || ||||| || || || | ||||||||| || || | ||||| || || || Sbjct 74060 GCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGA 74119 Query 141674 AACTGCATCATAGAAACGAATAACGT 141699 || |||||||| ||||| ||| || Sbjct 74120 AATCGCATCATAAAAACGTTTAATGT 74145 >seq2331 Length=68774 Score = 129 bits (142), Expect = 6e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 60002 TGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGCAC 60061 ||| |||||||| || |||||||| || || |||||||| || | || ||||| ||||| Sbjct 23640 TGTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCAC 23699 Query 60062 CGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCGTC 60121 ||| || || ||||||||||| || | |||||||| ||||| || || | ||||||||| Sbjct 23700 CGCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTC 23759 Query 60122 CAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAATTTTTAC 60181 | ||||| ||||| | || || || || | ||| || || ||||| | ||| | Sbjct 23760 TTCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAAT 23819 Query 60182 CGTTGGCTGGTATTCAATTTCTACTTCACGA 60212 ||||| | ||||| |||||||||| Sbjct 23820 AGTTGGTGCGACATCAATAGGTACTTCACGA 23850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538304991932480