Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq2372 156 5e-33 seq2331 134 1e-26 >seq2372 Length=84335 Score = 156 bits (172), Expect = 5e-33 Identities = 308/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Minus Query 61690 ATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATG 61749 |||| |||||||||||||| |||| || | || |||| | ||||| ||||||||| Sbjct 74143 ATTAAACGTTTTTATGATGCGATTTCCACCTTTAAAATTTCCCTACCTACGCCAATTATG 74084 Query 61750 GCAGGTGCTCGTACTCCGACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGT 61806 || || | || ||||| ||||||||||| ||||| ||||| | ||||| || | Sbjct 74083 GCGGGGGTGCGCACTCCAACTCGCCAGTT---TAGTTCGTGTGTATTGATTGAGTGCGAT 74027 Query 61807 GATTCGTTAAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACG 61865 ||| | | || ||||| || | ||| | ||| || |||| | || |||| Sbjct 74026 GATAGTCTTGACTCAATTAATGCCACCGCGAGCG-CTATTGTTAAATACGTATCACAACG 73968 Query 61866 AGCTGGTATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGG 61925 ||||| || || || || | |||| | | ||||| ||| | |||| | || Sbjct 73967 CGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGTCCGATCCGCGGTGG 73908 Query 61926 CGAAG--TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAA 61983 ||||| ||| ||||| ||| ||||||||| | || | |||||||| || || ||| Sbjct 73907 CGAAGCGTTC--CATACTGGTTGTATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAA 73850 Query 61984 TCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCAC 62043 || ||||||||||| || | || || || || || || | | ||||||| | ||||| Sbjct 73849 TCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCCGTTATGGCAT 73790 Query 62044 TTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATT 62103 ||||||||||| ||| |||| || || |||||| || | || ||||| || | Sbjct 73789 TTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTG 73730 Query 62104 CGACATATGGACTACGGAATTCAGATTAAT 62133 || ||| | || || || | || |||||| Sbjct 73729 CGCCATTTAGATTATGGGGTACAAATTAAT 73700 >seq2331 Length=68774 Score = 134 bits (148), Expect = 1e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 ||||| |||||| | || || ||||| | ||||||||||| | ||||| || ||||| Sbjct 23807 GGTGGACAACACTTAAATGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTTAAA 23748 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 || || ||||| || ||||| || || || ||||| || |||||||| || || ||||| Sbjct 23747 CACCCTGAAAACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAAT 23688 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTAC 142707 || | || || ||||| || ||||||||||| |||||||| ||||| Sbjct 23687 TCATTAACGCCAGAACAACAACGTGACGTTATTGCTCGTACTTTTAC 23641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542621491968840