Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq2372 210 2e-49 seq2331 141 1e-28 seq3883 86.0 7e-12 >seq2372 Length=84335 Score = 210 bits (232), Expect = 2e-49 Identities = 346/499 (69%), Gaps = 0/499 (0%) Strand=Plus/Minus Query 136347 ACGTTATTCGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTA 136406 || ||| ||||| |||||||| |||| || || ||||| | || || ||||||| Sbjct 74145 ACATTAAACGTTTTTATGATGCGATTTCCACCTTTAAAATTTCCCTACCTACGCCAATTA 74086 Query 136407 TGTCTGGTGTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTG 136466 || | || || || |||||||| |||||||| ||||| || ||| | ||||| | | || Sbjct 74085 TGGCGGGGGTGCGCACTCCAACTCGCCAGTTTAGTTCGTGTGTATTGATTGAGTGCGATG 74026 Query 136467 ATAGTCTTAATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTG 136526 |||||||| | |||||||| | |||| | ||| |||||| | | || | Sbjct 74025 ATAGTCTTGACTCAATTAATGCCACCGCGAGCGCTATTGTTAAATACGTATCACAACGCG 73966 Query 136527 CTGGTATTGGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTG 136586 |||| ||||| |||||||| || | ||| ||||| |||| || | || | Sbjct 73965 CTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGTCCGATCCGCGGTGGCG 73906 Query 136587 AAGTCAAGCATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCAT 136646 ||| ||||||||| |||||| || | || |||||||||| || || || || | Sbjct 73905 AAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAATCCT 73846 Query 136647 GCTCCCAAGGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGG 136706 | || |||||||| || || || || || || || | | ||||||| | ||||| || | Sbjct 73845 GTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCCGTTATGGCATTTAG 73786 Query 136707 AAGTTGAAAACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCC 136766 |||| |||||| | | || || || ||| ||| | || ||||| || | |||| Sbjct 73785 AAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTGCGCC 73726 Query 136767 ATTTAGATTATGGTGTTCAGATTAATAACCTGATGATTGAACGTTTGATTAAGAATGATT 136826 ||||||||||||| || || |||||||| | ||| | ||||| ||||| || || Sbjct 73725 ATTTAGATTATGGGGTACAAATTAATAAATTAATGTACCAGCGTTTAATTAAAAACGAAA 73666 Query 136827 ACATCACTCTGTTTAGTCC 136845 | ||| | |||||||| || Sbjct 73665 ATATCTCGCTGTTTAGCCC 73647 >seq2331 Length=68774 Score = 141 bits (156), Expect = 1e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 47265 TCGTGAAGTAGAAATTGAATACCAGCCAACGGTAAAAATTGAAGGCGGTCAGCACCTGAA 47324 |||||||||| ||||| | ||||| | ||| | ||||| || || ||| | || Sbjct 23850 TCGTGAAGTACCTATTGATGTCGCACCAACTATTAAAGTAGAAGGTGGACAACACTTAAA 23791 Query 47325 CGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCGGTTGAGCACCCAGAAAAATACCC 47384 || || || || ||||| ||||| || || |||||| | ||||| ||||| ||||| Sbjct 23790 TGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTTAAACACCCTGAAAACTACCC 23731 Query 47385 GCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGCTTCAACTCCTTGACACCAGAACA 47444 ||| | |||||||| ||||| || || |||||||| || || || || || |||||||| Sbjct 23730 GCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAATTCATTAACGCCAGAACA 23671 Query 47445 GCAGCGCGACGTTATCGCTCGTACTTTCACA 47475 || || |||||||| ||||||||||| ||| Sbjct 23670 ACAACGTGACGTTATTGCTCGTACTTTTACA 23640 >seq3883 Length=158444 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 47303 TTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCGG 47362 ||||||| ||||||||||| || |||||||| || ||| ||||| || | ||||| Sbjct 116379 TTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGCAA 116438 Query 47363 TTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGCT 47422 | || | || ||||| || || || | |||||||| ||||| || || || || || | Sbjct 116439 TGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACGTT 116498 Query 47423 TCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCAC 47474 | ||||| || || ||| || || ||||| || |||| || || || Sbjct 116499 TTAACTCTTTAACTAAAGAGCAACAAAAAGACGTCATTACTCGGACGTTTAC 116550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539860083865520