Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031103.1 Length=165772 Score E Sequences producing significant alignments: (Bits) Value seq2372 149 7e-31 seq2331 127 2e-24 seq3883 96.9 4e-15 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 149 bits (164), Expect = 7e-31 Identities = 311/460 (68%), Gaps = 10/460 (2%) Strand=Plus/Plus Query 138400 CATTAGGTCATTCAGTTGAACGCCATAATCCATATGACGAATACGGTTTTCTTCTACGCC 138459 ||||| | ||| | ||| || |||||||| | ||| || | || |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 138460 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138519 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 138520 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 138579 || || || || || || | || || || || || ||||| ||||| || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 138580 TTTCCAAAAAGGAATAACACCAGTATG--ACGTACTTCACCTGTACCAATCTTAGAACCT 138637 || |||| |||||| ||||||||| ||| |||| || | ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACG--CTTCGCCACCGCGGATCGGACTTCCT 73928 Query 138638 TCGGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATATTCAACA 138697 |||||| ||| |||| | ||||| |||||||||||||||| || | |||| |||| Sbjct 73929 AAGGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACA 73988 Query 138698 ATTGAAGCAGAAGCTTTG---TTAATAGACTTCAGCGAATCACCTGCTTCAATAACAACG 138754 || ||| || || ||||| || | || |||| | ||||| | || Sbjct 73989 AT---AGCGCTCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACA 74045 Query 138755 CATGAACTAAACTGCCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAA 138814 || ||||||||||| ||||||||||| || || |||||||| || || |||| ||| Sbjct 74046 CACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAA 74105 Query 138815 ATCTGTCGAGTAGATACCGCTTCATAAAAACGAATAACGT 138854 || | || || | ||| ||||||||||| ||| || Sbjct 74106 ATTTTAAAGGTGGAAATCGCATCATAAAAACGTTTAATGT 74145 >seq2331 Length=68774 Score = 127 bits (140), Expect = 2e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 60320 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 60379 ||||| |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 60380 GCATAACCGGATACGCGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 60439 |||||||| || || || || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 60440 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAATTTTAA 60497 || | ||||||||||| | || || || || | |||||| |||||||| | ||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAA 23818 >seq3883 Length=158444 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60319 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 60378 |||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 60379 TGCATAACCGGATACGCGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 60438 |||||||| || || || || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 60439 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 60491 | | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 70400 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-C 70458 |||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| | Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 70459 CATTATACGATATCCGCA 70476 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530305547832480