Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq911 154 2e-32 >seq911 Length=74078 Score = 154 bits (170), Expect = 2e-32 Identities = 213/298 (71%), Gaps = 0/298 (0%) Strand=Plus/Minus Query 201790 CATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGA 201849 |||| |||||||||||| ||| ||| | ||| || |||| | | ||| | || Sbjct 47483 CATGCAACAATATCTGGCTTTAATGCAAAAAATTCTTGATGACGGTGTGGCGAAATCAGA 47424 Query 201850 CCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGA 201909 || || || ||||| | || |||| || | || ||||||||||| || || | Sbjct 47423 TCGCACTGGGGTTGGCACTTTATCCATTTTTGGTCATCAAATGCGCTTTAATTTGCAGCA 47364 Query 201910 AGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCT 201969 ||| |||||||| |||||||| ||||| ||| || ||||| || || ||||| | || Sbjct 47363 AGGCTTTCCGCTCGTCACCACAAAAAAATGTCATCTACGTTCTATTATTCATGAATTACT 47304 Query 201970 GTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 ||||| | | || || ||||| || ||| | | ||||| || ||||| ||||| Sbjct 47303 TTGGTTTTTAAAAGGCGAAACCAATATTGCTTATCTACATGACAATAATGTCACTATCTG 47244 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGT 202087 ||| || ||||| |||||||||||||| |||| || || || ||||| ||||||||| Sbjct 47243 GGATGAGTGGGCCGATAAAAACGGTGATCTAGGACCCGTTTATGGTAAACAATGGCGT 47186 Score = 127 bits (140), Expect = 3e-24 Identities = 225/323 (70%), Gaps = 4/323 (1%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAG-TGCGGACATGTTCCTTGGCGTACCGTTTAACAT 202548 || ||||| ||||| ||||||||| |||| | |||| | ||| |||| ||||| || Sbjct 47008 CTGTCTTGCCAGCTTTATCAGCGTTCATGCG-ATGTGTTTTTAGGCCTACCTTTTAATAT 46950 Query 202549 CGCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAGGCGAACATGGCGGTAGGCGA 202608 || ||||| ||| | ||||| ||| | || || || | ||||||||||||| Sbjct 46949 TGCTAGCTACGCTTTGTTAGTACATATGATAGCGCAGCAATGTGATTTGGCGGTAGGCGA 46890 Query 202609 CTTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACCT 202668 || || ||||| ||||||||||| ||||| || |||||||| |||||||| | | | Sbjct 46889 TTTTGTTTGGACTGGTGGTGATACCCATCTTTATGCCAACCATATGGAACAAACACATTT 46830 Query 202669 CCAACTTACCCGTGACCCTAAAC-CGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATT 202727 ||| | | ||| || | | | | | || ||||| || || || || || || ||| Sbjct 46829 ACAATTGAGTCGT-ACGCCACGCGCACTCCCTAAGTTAGTGATTAAGCGCAAACCAAATT 46771 Query 202728 CCATCTTCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGA 202787 | || || || ||| || |||||||| ||| | | || || | || |||| || | Sbjct 46770 CGATTTTTGATTACTGTTTTGAAGACTTTGAGATCGAGGACTATGATCCGTATCCTGCCA 46711 Query 202788 TTAAAGCGCCCGTCGCGATCTAA 202810 |||| || || || ||||| ||| Sbjct 46710 TTAAGGCACCGGTAGCGATTTAA 46688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787948443627640