Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq1614 441 5e-119 seq916 91.5 1e-13 >seq1614 Length=125919 Score = 441 bits (488), Expect = 5e-119 Identities = 895/1314 (68%), Gaps = 20/1314 (2%) Strand=Plus/Plus Query 96689 TCAGCACCAGCATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTG 96748 ||||| ||||||||||||||| || || |||| || | ||| ||||| || | Sbjct 70731 TCAGCGTTAGCATAGTTATCAAAACGAGACCATTGCCCCTGAAATTTTAATCTTACTTTA 70790 Query 96749 CCAATTGGGCCATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTA 96808 |||||||||||||| || ||||| || | || | || ||||| || || || | Sbjct 70791 CCAATTGGGCCATTACGCTGCTTACCAAGTATGATTTCTGCAATACCTTTATGATCAGAA 70850 Query 96809 TCCGGGTGATAAACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATT 96868 | ||||||||||| || ||||| | |||||| |||| || || || ||||||||| Sbjct 70851 TTTTCATGATAAACTTCATCACGATAAATAAACATAATCACATCCGCATCTTGCTCAATT 70910 Query 96869 GCTCCTGATTCACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGAT 96928 | || ||||| |||||||| || || || || | ||| || || ||||| ||||| Sbjct 70911 GAACCGGATTCTCGTAAATCAGAGTTAACGGGCCTTTTATCAGCTCGCTGCTCAAGACTA 70970 Query 96929 CGATTAAGTTGTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGT 96988 ||||| | || || || |||||||| || |||| |||||| || || | || || | | Sbjct 70971 CGATTTAACTGGGATAACGCCACCACTGGCACTTCTAATTCTTTAGCAAGGGCTTTTAAT 71030 Query 96989 GAGCGAGAAATCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATA 97048 || || ||||| ||||| ||||||||||| || | || | ||| || ||||| Sbjct 71031 GATCGCGAAATTTCGGCTATTTCCAGCGTACGACTTTCGGATAAACTCGGTACACGCATT 71090 Query 97049 AGTTGCAGGTAGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGA 97108 | || || ||||||| |||||||||||| | ||| |||| ||| ||||| ||| | | Sbjct 71091 AACTGTAGATAGTCGACCATAATCATGCTTAGACCGCCATGTTCACGATAAATACGTCTA 71150 Query 97109 GCGCGGGAACGTAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGC 97168 || || ||||| | || | || || | | ||||| |||||| | || || | | Sbjct 71151 GCCCGTGAACGCAATTCCATTGGGGTTAAACCAGAAGAGTCGTCAATATACATGTTTTTC 71210 Query 97169 TTGTCCAACAGAATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGC 97228 || |||| || ||||||||| | || ||||| || |||||||||||||| | | ||| Sbjct 71211 TTTTCCAGCAAAATACCCATAGTGCTAGAAATGCGGGCCCAATCCTCGTCATCTAACTGC 71270 Query 97229 CCTGTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGC 97288 |||||||||||||| || ||||| ||||| | | || || || |||||||| | Sbjct 71271 CCTGTTCGAATACGGGTTTGATCGACGCGAGATAAGGAGGCAAGCATACGCATCATAATT 71330 Query 97289 TGGTGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCA 97348 || | ||||| || |||||||| | || ||| |||||||| | | |||||| Sbjct 71331 TGTTCAGCAGGCATTTCTAGGCTAAAGATCAGTACTGGCTTATCCTGCATCATGGCGGCA 71390 Query 97349 TTTTCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATG 97408 ||||| | ||||| ||||| ||||| || |||||||| || |||||||| |||||| Sbjct 71391 TTTTCACATAAGTTCATTGCAAATGTGGTTTTACCCATAGAAGGACGGGCGGCAACAATG 71450 Query 97409 ATGAGATCGGACGACTG-AAGCCCTGCCGTCTTCTTATTGAGATCGGTAAATCCGGTATC 97467 || | ||| || ||| |||||| || ||||| |||| |||||| ||| || || Sbjct 71451 ATTAAATCTGAACGCTGTAAGCCC-GCTGTCTTTTTATCAAGATCGACAAAACCAGTCGA 71509 Query 97468 AAGTCCCGTTACACCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGC 97527 || || ||||| ||||| || ||||||||||| | ||||| || |||| || ||| | Sbjct 71510 AACACCGGTTACGCCATCGTGTGGTCGCTGAAAGAGTTCTTCAATACGAGCAACGGTTTC 71569 Query 97528 ATCGAGAATGCTGGCGATATCTTTTGGACCACTACCGCTCTTTTGTCGT-TTTTCAGCTA 97586 || || | | | ||| ||| ||||| || || | | | | | |||||||| | Sbjct 71570 TTCCAGTACAGTTGTAATACTTTTAGGACCTTCGCCACT-TGTCGCCCTCTTTTCAGCAA 71628 Query 97587 TTTCAAAAACGCGGCGT-TCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGC 97645 | | ||| || | || || || ||| | || || | || | || || || | Sbjct 71629 TCTGAAACAC-CTTAGTCTCAGCGTAATCTAATAAGTCTTCACTTTCACGTCCTTCTGGT 71687 Query 97646 GCATATCCAGCT-TCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCG 97704 | ||| ||||| || || || || || | || | || | |||||| | | || || Sbjct 71688 GAATA-ACAGCTATCTGCAATATCGTTAGACACAGCGATTAATTCACGCATTATTGCCCG 71746 Query 97705 TTCACGAACGATATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACAT 97764 | |||| ||||||| ||||||| || ||| || ||| || || || ||||||| Sbjct 71747 CTGGCGAATAATATCCGTATAAGCATTAACATTGATCGTGCTTGGGGTATTTTTTGACAA 71806 Query 97765 CTCCGCAAGGTACGCAAAACCACCGGC--GCGTTCTAATTTACCGTTCTGTTCAAGTGCT 97822 || || | || |||||||| || | ||| |||| | | ||| || || | Sbjct 71807 TTCGGCTAAATAAGCAAAACCGCCAACATCCGT--TAATACATCCCGCTGCTCTAGATTT 71864 Query 97823 TCAGCAAGTGTTATCAAATCAATCGGTTTGCCATGACTTAATAACCTCTCCATCTCACTG 97882 || | || || || ||||| || || || | | | | | | ||| |||| Sbjct 71865 TCTGATAGCGTAATTAAATCTATAGGCACACCTTTCGTGACCATCGATTGCATTTCACGA 71924 Query 97883 AA---AATTTCACGATGA-GCATTGGTATAAAAATCATCAGCAACTATACGATCTGCCAC 97938 || ||||| | ||||| || | ||||||||||| || || || || || || Sbjct 71925 AAAATAATTTGATGATGACGC----GAATAAAAATCATGCTCAGTAATGCGCTCAGCAAC 71980 Query 97939 TTCATCCCAGCGGCAGTTATCAAGCATTAAGCCACCAAGTACAGCTTGTTCTGC 97992 | ||||||||| | ||||| ||||||| || ||| | ||| ||||| || || Sbjct 71981 ATGATCCCAGCGTAAATTATCTAGCATTAGGCTACCTAATACGGCTTGCTCGGC 72034 >seq916 Length=289624 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 98316 TGGTGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACC 98375 ||||||||||||| ||||||||||| |||||| ||||||||||||| | ||||| ||| Sbjct 161546 TGGTGGCCCCTACTGGACTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTGACC 161605 Query 98376 -ACTGAGCTAAAGGGCC 98391 |||||||||| ||||| Sbjct 161606 AACTGAGCTAAGGGGCC 161622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330876781475794