Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq911 127 8e-25 >seq911 Length=74078 Score = 127 bits (140), Expect = 8e-25 Identities = 280/417 (67%), Gaps = 2/417 (0%) Strand=Plus/Minus Query 51918 GTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAG 51977 |||| || ||||| || ||||| ||| |||| ||| | || || || || |||||||| Sbjct 47254 GTCACTATCTGGGATGAGTGGGCCGATAAAAACGGTGATCTAGGACCCGTTTATGGTAAA 47195 Query 51978 CAGTGGCGTAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTC 52037 || |||||| |||| | || | | || ||| |||||| || ||| || | Sbjct 47194 CAATGGCGTGCTTGGCAAGCAGCGGATGGTAAGCAACGCGATCAAATTAGTGAGGTGATT 47135 Query 52038 AAATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGT 52097 || ||| || | |||| ||| || || || || || ||||||||||| || Sbjct 47134 GAACAAATCAAAACTAATCCCGATTCACGTCGTTTAATCGTATCAGCTTGGAATGTCGGA 47075 Query 52098 GATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA 52157 || | || | ||||| ||||| || ||||| | | ||||| || ||||| || || Sbjct 47074 GAGCTCGAGCAGATGGCTTTGGCGCCATGCCACGCTTTCTTCCAGTTTTATGTGGCGGAC 47015 Query 52158 GGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTT 52217 || || || || ||||| | |||||||| || ||| |||| || ||| | || ||| Sbjct 47014 GGCAAACTGTCTTGCCAGCTTTATCAGCGTTCATGCGATGTGTTTTTAGGCCTACCTTTT 46955 Query 52218 AACATTGCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGT-TGGCCTTGATGT 52276 || ||||| ||||| | ||| | ||| |||| || | |||| | || | | || Sbjct 46954 AATATTGCTAGCTACGCTTTGTTAGTACATATGATAGCGC-AGCAATGTGATTTGGCGGT 46896 Query 52277 TGGTGAATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTAGATCA 52333 || || || ||||||||||||| || |||| | || ||||||| | || || Sbjct 46895 AGGCGATTTTGTTTGGACTGGTGGTGATACCCATCTTTATGCCAACCATATGGAACA 46839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190083451168990