Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq739 141 2e-28 seq503 134 3e-26 seq2682 102 2e-16 >seq739 Length=1399493 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| || || |||||||| || ||||| ||||| | | |||||| Sbjct 7021 AGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTT 6962 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| || || ||||| | | ||||||||| | | || ||||| Sbjct 6961 CCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCT 6902 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || ||| ||| |||||| |||| ||| || |||||||||||| Sbjct 6901 TTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTA 6842 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||||| || || | ||||| ||||||| |||||| || Sbjct 6841 ATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCATGTT 6801 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| || || |||||||| |||||||| ||||| | | |||||| Sbjct 7705 AGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTT 7646 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| || || ||||| | | ||||||||| | | || || || Sbjct 7645 CCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCT 7586 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || || ||| |||||| |||| ||| |||||||| | ||| Sbjct 7585 TTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTA 7526 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || || |||| ||||||| Sbjct 7525 ATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7487 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| || || |||||||| |||||||| ||||| | | |||||| Sbjct 7933 AGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTT 7874 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| || || ||||| | | ||||||||| | | || || || Sbjct 7873 CCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCT 7814 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || || ||| |||||| |||| ||| |||||||| | ||| Sbjct 7813 TTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTA 7754 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || || |||| ||||||| Sbjct 7753 ATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7715 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| || || |||||||| || ||||| ||||| | | |||||| Sbjct 7477 AGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTT 7418 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| || || ||||| | | ||||||||| | | || || || Sbjct 7417 CCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCT 7358 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || || ||| |||||| |||| ||| |||||||| | ||| Sbjct 7357 TTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTA 7298 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || || |||| ||||||| Sbjct 7297 ATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7259 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| || || |||||||| || ||||| ||||| | | |||||| Sbjct 7249 AGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTTCTT 7190 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| || || ||||| | | ||||||||| | | || || || Sbjct 7189 CCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCT 7130 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || |||||||| || ||| |||||| |||| || || ||||| | ||| Sbjct 7129 TTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTA 7070 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || || |||| ||||||| Sbjct 7069 ATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7031 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || | ||| || || |||||||| |||||||| ||||| | | |||||| Sbjct 8191 AGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTTCTT 8132 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 ||||||||||| ||| || || ||||| | | ||||||||| | | || || || Sbjct 8131 CCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCT 8072 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || |||||||| || ||| |||||| |||| || || ||||| | || Sbjct 8071 TTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAGGTG 8012 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || || |||| ||||||| Sbjct 8011 ATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7973 >seq503 Length=216272 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||| || ||||| || || || || ||||||||||| | || || | |||||| Sbjct 161092 AGAACAAGGTGGAGAGTTGATTCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATCT 161033 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | ||||| || || | || ||||||||||| ||| Sbjct 161032 TCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCT 160973 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||||||| ||| ||| | |||| |||| ||| || |||||||| || |||||| Sbjct 160972 TGAATTTTTGCTTTTACATTTTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTT 160913 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||||||||| | ||||| Sbjct 160912 TTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 160881 Score = 123 bits (136), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || || ||||| || |||||||| | | || | ||||||| Sbjct 162303 AGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAGAGTGTGCGCCCATCT 162244 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || || ||||| | || || ||||| | | |||||||| || | Sbjct 162243 TCAAGTTGCTTT--CCAGCAAAGATCAATCTTTGTTGGTCTGGAGGAATTCCTTCTTTGT 162186 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||||||| ||| ||| | |||| | || ||| || |||||||| || |||| Sbjct 162185 CTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAGCTTCAACTTCAAGTGTGATAG 162126 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || ||||||||||| | ||||| Sbjct 162125 TTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||||||||| ||||| ||||| || || || |||| | || | || || Sbjct 162767 AGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCGTCC 162708 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | ||| || |||||||| | ||||| || || | | || ||||| || || Sbjct 162707 TCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCC 162648 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | |||||||| ||| ||||| ||||| || ||| Sbjct 162647 TGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTT 162588 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || || | |||||| Sbjct 162587 TTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162555 >seq2682 Length=416 Score = 102 bits (112), Expect = 2e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || |||||||||||||| || || ||||| || || || || | | || Sbjct 100 CTGAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTG 159 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| | ||| || |||||||| | ||||| || || | | || ||| Sbjct 160 CGTCCGTCTTCCAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGTGGAATACCT 219 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||| || |||||| | || | |||||||| ||| ||||| ||| Sbjct 220 TCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGA 279 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || || ||||| ||||| | ||||| Sbjct 280 GTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153738619474089