Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq129 100 2e-16 seq503 87.8 2e-12 seq1081 82.4 6e-11 >seq129 Length=1828789 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| || ||||| ||||| ||||| || |||||||| ||| | ||| ||| | Sbjct 1158593 AAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCA 1158652 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 ||| || ||| | |||||| ||||| || |||||||| |||| ||| Sbjct 1158653 TCAGATACTATTGAAAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATTCCACCTGAT 1158712 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || ||| | ||||||| ||| || || |||||||||||| ||| || | |||||| Sbjct 1158713 CAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTAT 1158772 Query 111277 AATATACAAAAAG 111289 ||||| ||||||| Sbjct 1158773 AATATTCAAAAAG 1158785 >seq503 Length=216272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || || ||||| || |||| || ||||| || ||| | ||| ||| | | Sbjct 160425 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACCCTTGAAGTTGAAGCTTCC 160484 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || ||| ||| ||| || |||||||| |||| || ||| Sbjct 160485 GATACAATTGAGAACGTGAAAGCAAAGATTCAAGATAAAGAAGGTATTCCTCCAGACCAA 160544 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || ||| | || | ||| || ||||||||||||||| | | ||| | | ||||| | Sbjct 160545 CAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGCGCACACTTT--CTGATTACA 160602 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||||| ||||| || || ||| | || | |||||| | || || Sbjct 160603 ATATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGG 160651 >seq1081 Length=102446 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 111214 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111273 ||||||||||| | || | ||| || |||||||| || ||| || |||| | | ||| Sbjct 20029 GATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAGAACTTTATCAGAT 19970 Query 111274 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||||| || || ||||||||| |||| |||||| | ||| | | ||||| Sbjct 19969 TATAATATTCAGAAGGAATCTACATTACACTTAGTGCTACGTTTAAGAGGTGG 19917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421782622159384