Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031902.1 Length=125114 Score E Sequences producing significant alignments: (Bits) Value seq3910 127 2e-24 seq3883 118 8e-22 >seq3910 Length=82658 Score = 127 bits (140), Expect = 2e-24 Identities = 383/583 (66%), Gaps = 10/583 (2%) Strand=Plus/Plus Query 40350 TCGATGTAAACAGTACGCCCTTCAGGGAACTGATTTGGAAATTCTTTCTTCATCTGCTCG 40409 || || || | |||||| |||||||| |||||||||||| ||||| | | | | Sbjct 19218 TCAATATAGAGAGTACGACCTTCAGGCAACTGATTTGGATATTCTGCCAATAACGCATTA 19277 Query 40410 AACAGTTCAGAAGTAATTGAACGATCGGAGTTAATACGTAAACCATCATCTACCCACTTA 40469 || | | || | |||||||| ||||| | |||||||||||||||||||| || Sbjct 19278 AATAAAGGCGTGGTTTTAGAACGATCAGAGTTTACGCGTAAACCATCATCTACCCATTTT 19337 Query 40470 ACAGTAGGCGCTAGAACAATTACTAAATCGTAATGTTCTTCTTTT--GCAATTGCTGTAA 40527 || || ||||||| | ||| || ||||||| ||||| || | |||||||||| | Sbjct 19338 ACTGTTGGCGCTAAATAAATCACATAATCGTA--GTTCTCATTATGGGCAATTGCTGAGA 19395 Query 40528 CCACAGGATTCTTACGATGTTCATAAAGTCTGTGGTAGAACTCAGTAATAAAAGCATTTG 40587 | | ||||| || |||||| | | ||| || | ||||| || |||||||||| Sbjct 19396 CAATTGGATTACTATAGCCTTCATATAAACGGTGATAATATTCAGTGATGAAAGCATTTG 19455 Query 40588 TATCCACAAACATGATCTTATTTGCAGTACGTTC--TGCTTCAAACTCTAGCTCTTTGTG 40645 |||| | ||| | || ||||| ||| | | ||| ||||| || |||||||| | Sbjct 19456 TATCAATAAAAACAATTTTATTGGCA-TGC-TTCAGCGCTTCTTCTTCAAGCTCTTTATT 19513 Query 40646 TCTGAACGCAATTTTACTATAATCTTCACTGGTAAGCAGATTTTCGTTACCAACTAGATC 40705 | | ||||||||| ||||| | ||| | || || | |||| || | Sbjct 19514 ACGATAAGCAATTTTAGCGTAATCATAACTTTCATATAGCGACTCATCCCCAAATAATAC 19573 Query 40706 AACTTCACAATACGTTCGGCCATATTCTTCTACCCACGAAGTGTTGTATAGCTTCGCAAG 40765 ||| ||||||||| ||||| ||||| ||| || || | || || |||| Sbjct 19574 TCGTTCCGAATACGTTCTACCATACTCTTCGGTCCAACTGGTATTAAACAGTTTACCAAG 19633 Query 40766 GTATTTTGTTAAAGTAGTCTTTCCCGAGCTTTCAGTCCCAATGATTACA-ACCTTACGCA 40824 ||| | || | || || | |||||| ||||| | ||| || || Sbjct 19634 CATCATTGCCATGGTTGATTTACCTGTGCTTTCTTGTCCAATTA-AACAGACGCTAATGG 19692 Query 40825 CGTAATCTTTACGAACTACGCTAGGAAGAAACTCCCAATACTTCATAAGATCATTACGAA 40884 ||| |||||||| || | ||||| | | |||||||| || || || ||||| | Sbjct 19693 TGTAGTCTTTACGCACAATAGAAGGAATATAATCCCAATATTTATAAATATTTTTACGTA 19752 Query 40885 TCATTGTAGCTGAGATTGGAACACGAGTACGATCAGAATCTAC 40927 ||| | |||||||| || || |||||||| | ||||| || Sbjct 19753 CCATATTGGCTGAGATAGGCACTCGAGTACGTTGTGAATCAAC 19795 >seq3883 Length=158444 Score = 118 bits (130), Expect = 8e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 28882 ATTATATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATG 28941 |||| || | |||||||| || ||| |||| ||||| || ||||| || || || | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 28942 CGTTAAATCGAACAGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 29001 |||||| || || ||||| ||||| ||||| || || || || ||||| |||||||||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 29002 GTTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 29061 || | ||||| || | ||||| |||| || || ||||| ||||||||||||| Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 29062 CCTCGACT 29069 | || ||| Sbjct 116384 CTTCAACT 116377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 400212883614925