Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq1913 80.6 8e-11 >seq1913 Length=212763 Score = 80.6 bits (88), Expect = 8e-11 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 36543 CCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGTTTC 36602 ||||| || ||||| || ||||| || | |||||| || |||| ||| || | | Sbjct 142415 CCTTCAATATAAACTTGTGAACCACGGCGTAAGTATTCACCAGCAATTTCTGCTAATCGA 142474 Query 36603 CCGAATATGACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTATCT 36662 || || || |||| || ||||| || || |||||||| || || || ||||||||| Sbjct 142475 CCAAAAATAACAACGCGGTGCCATTCAGTGCGTTCTTTCGGCTCGCCGGTTTGCTTATCT 142534 Query 36663 TTCCACTGCTCAGATGTTGCAACGGAAATGTTGACAATTGCAGAACCTGATGCTGAATAT 36722 |||||| ||| || || ||||| |||| || | ||| ||| | | |||| Sbjct 142535 TTCCACGTCTCCGACGTCGCAACACTAATGGTGGTCACTGCGCCACCATTCGGTAAATAA 142594 Query 36723 TTAACTTCAGGGTCGTTTCCGAGAGTTCCGACAATAATTACTTTATT 36769 ||||| || || | ||| | | | || || | ||| |||||||| Sbjct 142595 CGCACTTCTGGATCTTGTCCTAAATTACCCACTAGAATAACTTTATT 142641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152073160512708