Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031933.1 Length=114180 Score E Sequences producing significant alignments: (Bits) Value seq3910 127 1e-24 seq3883 118 8e-22 >seq3910 Length=82658 Score = 127 bits (140), Expect = 1e-24 Identities = 383/583 (66%), Gaps = 10/583 (2%) Strand=Plus/Plus Query 39461 TCGATGTAAACAGTACGCCCTTCAGGGAACTGATTTGGAAATTCTTTCTTCATCTGCTCG 39520 || || || | |||||| |||||||| |||||||||||| ||||| | | | | Sbjct 19218 TCAATATAGAGAGTACGACCTTCAGGCAACTGATTTGGATATTCTGCCAATAACGCATTA 19277 Query 39521 AACAGTTCAGAAGTAATTGAACGATCGGAGTTAATACGTAAACCATCATCTACCCACTTA 39580 || | | || | |||||||| ||||| | |||||||||||||||||||| || Sbjct 19278 AATAAAGGCGTGGTTTTAGAACGATCAGAGTTTACGCGTAAACCATCATCTACCCATTTT 19337 Query 39581 ACAGTAGGCGCTAGAACAATTACTAAATCGTAATGTTCTTCTTTT--GCAATTGCTGTAA 39638 || || ||||||| | ||| || ||||||| ||||| || | |||||||||| | Sbjct 19338 ACTGTTGGCGCTAAATAAATCACATAATCGTA--GTTCTCATTATGGGCAATTGCTGAGA 19395 Query 39639 CCACAGGATTCTTACGATGTTCATAAAGTCTGTGGTAGAACTCAGTAATAAAAGCATTTG 39698 | | ||||| || |||||| | | ||| || | ||||| || |||||||||| Sbjct 19396 CAATTGGATTACTATAGCCTTCATATAAACGGTGATAATATTCAGTGATGAAAGCATTTG 19455 Query 39699 TATCCACAAACATGATCTTATTTGCAGTACGTTC--TGCTTCAAACTCTAGCTCTTTGTG 39756 |||| | ||| | || ||||| ||| | | ||| ||||| || |||||||| | Sbjct 19456 TATCAATAAAAACAATTTTATTGGCA-TGC-TTCAGCGCTTCTTCTTCAAGCTCTTTATT 19513 Query 39757 TCTGAACGCAATTTTACTATAATCTTCACTGGTAAGCAGATTTTCGTTACCAACTAGATC 39816 | | ||||||||| ||||| | ||| | || || | |||| || | Sbjct 19514 ACGATAAGCAATTTTAGCGTAATCATAACTTTCATATAGCGACTCATCCCCAAATAATAC 19573 Query 39817 AACTTCACAATACGTTCGGCCATATTCTTCTACCCACGAAGTGTTGTATAGCTTCGCAAG 39876 ||| ||||||||| ||||| ||||| ||| || || | || || |||| Sbjct 19574 TCGTTCCGAATACGTTCTACCATACTCTTCGGTCCAACTGGTATTAAACAGTTTACCAAG 19633 Query 39877 GTATTTTGTTAAAGTAGTCTTTCCCGAGCTTTCAGTCCCAATGATTACA-ACCTTACGCA 39935 ||| | || | || || | |||||| ||||| | ||| || || Sbjct 19634 CATCATTGCCATGGTTGATTTACCTGTGCTTTCTTGTCCAATTA-AACAGACGCTAATGG 19692 Query 39936 CGTAATCTTTACGAACTACGCTAGGAAGAAACTCCCAATACTTCATAAGATCATTACGAA 39995 ||| |||||||| || | ||||| | | |||||||| || || || ||||| | Sbjct 19693 TGTAGTCTTTACGCACAATAGAAGGAATATAATCCCAATATTTATAAATATTTTTACGTA 19752 Query 39996 TCATTGTAGCTGAGATTGGAACACGAGTACGATCAGAATCTAC 40038 ||| | |||||||| || || |||||||| | ||||| || Sbjct 19753 CCATATTGGCTGAGATAGGCACTCGAGTACGTTGTGAATCAAC 19795 >seq3883 Length=158444 Score = 118 bits (130), Expect = 8e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 27991 ATTATATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATG 28050 |||| || | |||||||| || ||| |||| ||||| || ||||| || || || | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 28051 CGTTAAATCGAACAGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGAT 28110 |||||| || || ||||| ||||| ||||| || || || || ||||| |||||||||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 28111 GTTTCTGCGCATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCAC 28170 || | ||||| || | ||||| |||| || || ||||| ||||||||||||| Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 28171 CCTCGACT 28178 | || ||| Sbjct 116384 CTTCAACT 116377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 365226454117059