Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_031934.1 Length=168929 Score E Sequences producing significant alignments: (Bits) Value seq2372 118 1e-21 >seq2372 Length=84335 Score = 118 bits (130), Expect = 1e-21 Identities = 247/368 (67%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 142533 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCA 142592 ||||| ||||| |||||||| | |||||| | | || || || || || || | || Sbjct 73776 TTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCGCGTACCCCG 73835 Query 142593 CCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAATAACACCGGTA 142652 ||||| ||||| ||||| ||||| || ||||| | || | ||||||||| ||| ||| Sbjct 73836 CCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATACAACCAGTA 73895 Query 142653 TGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGATA 142712 || ||||||| || || || ||| ||||| ||| |||| | || || Sbjct 73896 TGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTACCGGCATTAATG 73955 Query 142713 CCAATACCTGCACGTTTAGAAATGTATTCAATTATTGAGTTAGCAGTTTTGTTAATAGAT 142772 ||||| || || |||| || | ||||| || || | | | || || ||||| || Sbjct 73956 CCAATTCCAGCGCGTTGTGATACGTATTTAACAATAGCGCTCGCGGTGGCATTAATTGAG 74015 Query 142773 TTCAGCGAGTCGCCGGCTTCAATAACCACACAAGAACTAAATTGACGGGTTGGTGTACGT 142832 | || || || ||||| | ||||| |||||||| || || ||||| || || Sbjct 74016 TCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGTTGGAGTGCGC 74075 Query 142833 GCTCCAGCCATAATAGGAGTAGGCAATGAAACCTGACGAGTACTTACAGCATCATAAAAA 142892 | || |||||||| || ||||| | |||| | | || | |||||||||||| Sbjct 74076 ACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGAAATCGCATCATAAAAA 74135 Query 142893 CGAATAAT 142900 || |||| Sbjct 74136 CGTTTAAT 74143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 540407245841960