Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1274 104 2e-17 >seq1274 Length=440581 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||| ||| | |||||| |||||| | |||||||||||| |||| |||||| Sbjct 124115 TCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTTTC 124174 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| || || || ||||| ||| |||||||||||| || || || ||||| || Sbjct 124175 AGCCAGAAAATAGCGGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATGCA 124234 Query 23653 ACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCC 23712 || | |||| | |||||| ||| | | || | ||||| ||| || ||| ||||| Sbjct 124235 ACCACACGTTCAGGAAATGTGGCACTCTCATGATTTATCCAATTTAATGCCCAGTTAGCT 124294 Query 23713 TT 23714 || Sbjct 124295 TT 124296 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23771 TATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAG 23830 ||||||| |||||||||||||| | | |||||||| || || | |||||| || | Sbjct 124446 TATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGG 124505 Query 23831 CAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTT 23890 | | ||||| ||||| ||||| | || || | | ||| || || | | ||||| || Sbjct 124506 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGTT 124565 Query 23891 TAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTA 23950 | | ||| || ||||| || |||||| ||| |||||||| || | |||| || Sbjct 124566 CGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 124625 Query 23951 TAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCA 23988 | |||||| | |||||| | | || | ||||| ||| Sbjct 124626 TGAAATGTTTCTCATCACTAGTCAAATGATTCCAGTCA 124663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521451763102600