Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq739 120 2e-22 seq503 120 2e-22 >seq739 Length=1399493 Score = 120 bits (132), Expect = 2e-22 Identities = 172/238 (72%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||||||| || | || |||||| ||| || || ||||| ||||| Sbjct 7034 CATTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATC 6975 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || ||||| || || |||||||||||||||||||| ||| Sbjct 6974 TGAAAGAGTT--CTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCT 6917 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | ||| | |||||| || || ||||| |||| | ||| |||| ||||| | | Sbjct 6916 GGAGGAATACCTTCTTTGTCTTGGATCTT-AGCTTTCACATTCTCTATTGTGTCAGAAGC 6858 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||| || || | ||||| || || || || | |||||| |||||||| |||||| || Sbjct 6857 TTCAACTTCAAGAGTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCATGTTG 6800 Score = 109 bits (120), Expect = 4e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||||||| || | || |||||| ||| || |||||||| ||||| Sbjct 7718 CATTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATC 7659 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || || || || || |||||||||||||||||||| ||| Sbjct 7658 TGAAAGAGTT--CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCT 7601 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | ||| | ||| || || || ||||| ||||| | |||| ||||| | | | Sbjct 7600 GGAGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCT 7541 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| ||||| || || || || || || || || ||||| ||||| Sbjct 7540 TCTACTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7488 Score = 107 bits (118), Expect = 1e-18 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||||||| || | || |||||| ||| || || ||||| ||||| Sbjct 7262 CATTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATC 7203 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || || || || || |||||||||||||||||||| ||| Sbjct 7202 TGAAAGAGTT--CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCT 7145 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGA 44283 | ||| | ||| || || ||| | | || || | || ||| |||| ||||| | | Sbjct 7144 GGAGGAATACCCTCTTTGTCC-TGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGC 7086 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| ||||| || ||||| || || || || || ||||| ||||| Sbjct 7085 TTCAACTTCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | |||||||| || | || |||||| ||| || || ||||| ||||| Sbjct 7490 CATTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATC 7431 Query 44167 GGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | ||||| | | || || || || || || |||||||||||||||||||| ||| Sbjct 7430 TGAAAGAGTT--CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCT 7373 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | ||| | ||| || || || ||||| ||||| | |||| ||||| | | | Sbjct 7372 GGAGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCT 7313 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| ||||| || || || || || || || || ||||| ||||| Sbjct 7312 TCTACTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7260 Score = 104 bits (114), Expect = 2e-17 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | |||||||| || | || || ||| ||| || |||||||| ||||| | Sbjct 8202 TTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 8143 Query 44169 C--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| | | || || ||||| || || |||||||||||||||||||| |||| Sbjct 8142 AAAGAGTT--CTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGG 8085 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||| || || ||| | | || || | || ||| |||| ||||| | | || Sbjct 8084 AGGAATACCCTCTTTGTCC-TGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTT 8026 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || || ||||| || || || || || ||||| ||||| Sbjct 8025 CAACTTCCAAGGTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7974 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 44109 TTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG 44168 |||| || | |||||||| || | || || ||| ||| || |||||||| ||||| | Sbjct 7944 TTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 7885 Query 44169 C--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| | | || || || || || || |||||||||||||||||||| |||| Sbjct 7884 AAAGAGTT--CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGG 7827 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||| || || || ||||| ||||| | |||| ||||| | | ||| Sbjct 7826 AGGAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTC 7767 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| ||||| || || || || || || || || ||||| ||||| Sbjct 7766 TACTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCAT 7716 >seq503 Length=216272 Score = 120 bits (132), Expect = 2e-22 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||||||| | | || || || || || |||||||| || ||||| Sbjct 160658 TTGCATTCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTA 160599 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | ||| |||| | || |||| || || || ||||||||||| | ||| || || Sbjct 160598 ATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTGGTC 160539 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || ||| | |||||| || || ||||| ||||| | |||| | || || |||| | Sbjct 160538 TGGAGGAATACCTTCTTTATCTTGAATCTT-TGCTTTCACGTTCTCAATTGTATCGGAAG 160480 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||| || || | || || || ||||| || || ||||| |||||||| |||||||| Sbjct 160479 CTTCAACTTCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCATGAT 160422 Score = 114 bits (126), Expect = 9e-21 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||||||| | | || || || || || |||||||| || ||||| Sbjct 162325 TTGCATTCCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTA 162266 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | |||| |||| | || || || ||||| || ||||||||||| | || || || Sbjct 162265 ATCAGAGAGTGTGCGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAATCTTTGTTGGTC 162206 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGG 44282 || ||| | |||| |||| | | | || ||| || | || |||| || |||| | Sbjct 162205 TGGAGGAATTCCTT-CTTTGTCTTGAATTTTTGCTTTTACATTTTCTATCGTATCGGAAG 162147 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || | || || || ||||| || |||||||||||||| |||||||| Sbjct 162146 CTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 162092 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||| || ||||||||||| | ||| ||| | || ||| Sbjct 161089 ACAAGGTGGAGAGTTGATTCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATCTTCC 161030 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || ||||| ||||| | ||| ||||||| || | |||||||| | | | Sbjct 161029 AGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTAT-CTTG 160971 Query 44249 ATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 | || ||| || | || |||| ||||||| | ||| || || | || || || || Sbjct 160970 AATTTTTGCTTTTACATTTTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTT 160911 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||||||||||||| |||||||| Sbjct 160910 TCCTGTAAGGGTCTTCACGAAAATTTGCAT 160881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359966010537903