Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq503 91.5 1e-13 seq739 89.7 5e-13 seq2682 82.4 7e-11 >seq503 Length=216272 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 41626 TACATCACCG-CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGT 41684 || |||| || || || || || || | || ||||| || || |||||| ||||| | Sbjct 162793 TAAATCATCGGCCACCACGAAGGCGAAGAACAAGATGAAGAGTTGACTCCTTTTGAATAT 162734 Query 41685 TATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTT 41744 |||||||||| || ||||| |||| || | || || || ||||| |||| | ||||| Sbjct 162733 TATAGTCGGACAGCGTGCGACCGTCCTCCAATTGTTTACCAGCGAAGATCAATCTCTGTT 162674 Query 41745 GGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCG 41803 | || | |||| | || || ||| ||| | || || | || | | |||||| Sbjct 162673 GATCGGGTGGAATACCTTCTTTATCC-TGAATCTTGGCCTTGACATTTTCGATAGTGTCT 162615 Query 41804 CTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | |||||| || | ||||||||||| || || || || ||||| ||||| ||||| Sbjct 162614 GAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCAT 162556 >seq739 Length=1399493 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || | || || | ||| |||||| ||| |||||||||||||| || || Sbjct 7258 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAA 7199 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || || || || ||||| || || |||| ||||| ||||| | ||| Sbjct 7198 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7139 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| ||| |||| || | ||| | | ||||| | || || Sbjct 7138 ATACCCTCTTTGTCC-TGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAAC 7080 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || || || || ||||| || |||||||| Sbjct 7079 TTCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 >seq2682 Length=416 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || ||||| ||||| |||||||| || || ||||| Sbjct 103 AGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGT 162 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || | || || || ||||| |||| | |||||| || | |||| | || Sbjct 163 CCGTCTTCCAATTGTTTACCAGCGAAGATCACTCTCTGTTGATCGGGTGGAATACCTTCT 222 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| | || || | || || |||||| | ||| || || | || Sbjct 223 TTATCC-TGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGT 281 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || || || ||||| |||||||| ||||| Sbjct 282 TATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462271875650800