Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq15 122 9e-23 >seq15 Length=11467329 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16464 TATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGG 16523 |||| | ||||| |||||||||| | | ||||||||||||||| | || ||||||| Sbjct 5182329 TATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGG 5182270 Query 16524 CTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTT 16583 | | ||||| |||||||| || || ||||| | || ||||||||| |||||||| Sbjct 5182269 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGTT 5182210 Query 16584 CCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAA 16643 | | ||||||||||| ||||| || ||| || ||||| || || || | || | Sbjct 5182209 CGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 5182150 Query 16644 TGAAATATTTTTCGTCA 16660 |||||| ||| || ||| Sbjct 5182149 TGAAATGTTTCTCATCA 5182133 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGT-CGCAATTAA 16079 ||| |||| ||||||||| || |||||||| ||||||||||||| ||||| || || | Sbjct 5183059 TTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACA-TAAGTGTACAGTTCA 5183001 Query 16080 TTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTT 16139 ||||||| | | | || || | ||| | |||||||||| |||||| || || || | Sbjct 5183000 TTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAATTCTTGTTCAATTTTGACAGCAT 5182941 Query 16140 CTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTA 16199 ||||||| || ||| | || ||||||| | || | ||||| ||||||| Sbjct 5182940 CTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTTTGTACAATATGTTTGAACATTA 5182881 Query 16200 GACACGCGAAGTCGCAATGTAGTCC 16224 ||| ||||| || ||||||| ||| Sbjct 5182880 AACATGCGAAATCACAATGTAATCC 5182856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511378543457880