Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq382 93.3 3e-14 >seq382 Length=5783 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 18625 TAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCG 18684 ||||||||||||| || |||||||||| ||| ||||| ||||||||||||||||| | | Sbjct 878 TAACTACAAAGCGAGTATTTTGGAGGGGCGTAGTGGAGGAGTTGTTATGGTTTATTAGAG 937 Query 18685 GGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGAT 18744 | || || || |||||||| | || ||| | |||||||||||| | || | | Sbjct 938 GATCGACAAATGCCAAAGAATTAAGTCAAAAGGATGTCCACATATGGGATGCAAACAGTT 997 Query 18745 CGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCA 18804 | | | || ||| | ||||||| || ||| | || || | || || Sbjct 998 CACGTGAGTTCCTAGACTCTTGTGGCTTCACAAATAGAAAAGAAGGAGATTTAGGACCTG 1057 Query 18805 TTTACGGCTTCCAGTGGAGACATTTTGGAGC 18835 |||| || || || |||||||||| ||| || Sbjct 1058 TTTATGGATTTCAATGGAGACATTATGGTGC 1088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399476690031405