Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6 149 7e-31 seq15 125 8e-24 >seq6 Length=12724418 Score = 149 bits (164), Expect = 7e-31 Identities = 199/275 (72%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 53056 CTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 53115 ||| | ||| ||| || | | ||||| ||| || || | |||| ||| | | ||| Sbjct 10926385 CTGTACAGAACCATTATTTGCTATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCT 10926326 Query 53116 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 53175 || || | | ||| | | ||| ||||| || |||||||| ||||||||||| ||||| Sbjct 10926325 TTCAGTCAGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCT 10926266 Query 53176 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 53235 | | ||||||||||||||||| ||||| | ||| ||||||||||| || ||||| || Sbjct 10926265 TCTTGCATAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGC 10926206 Query 53236 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 53293 ||| || || || |||||||| || | |||||| ||| |||| || ||||| | Sbjct 10926205 AGTAGACGCCGTTGGCATAGGGGCGATTAATAAAGAATTCCTAACTCC--ATGTTTAGCA 10926148 Query 53294 ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 ||||| ||||| ||| | ||| ||||| | ||| Sbjct 10926147 ATTTTTTCTTTCAGAATTGTCCAGTTCCATAAATC 10926113 Score = 140 bits (154), Expect = 4e-28 Identities = 218/307 (71%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 10924958 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 10924899 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 10924898 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 10924839 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG--CTTCC 54279 |||| | ||||||||| | |||||| ||| ||||| || || || ||| | | || Sbjct 10924838 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 10924781 Query 54280 ACTGGCACGAATATTA-CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 || || |||||| | || | | || || || || || || ||| || | || Sbjct 10924780 TCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTG 10924722 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 | |||| |||||| |||||||| || || ||||| |||||||| |||| | |||| || Sbjct 10924721 CACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAA 10924662 Query 54399 AACAGCT 54405 |||| || Sbjct 10924661 AACAACT 10924655 Score = 109 bits (120), Expect = 7e-19 Identities = 220/323 (68%), Gaps = 14/323 (4%) Strand=Plus/Minus Query 53549 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 53608 ||||| ||||| |||||| | ||| || ||| ||||| |||| ||||||||||| Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 53609 ATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTG 53665 | ||| |||||||| | | || | | |||||| |||| || | |||||| Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGTT-ACTTTTCGCAGTTTT 10925589 Query 53666 AGAAAATCAAATTGTCCATCTA-------TTACAAACATGTTCAATGCAATAGATGCCAG 53718 |||||||||| ||| || |||||||||| |||| ||| || || || | Sbjct 10925588 TCAAAATCAAAT-GTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGCTAA 10925530 Query 53719 ATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACT 53778 ||| || || || | |||| | | | |||||||| || || || || | |||||| Sbjct 10925529 ATTGCATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACT 10925470 Query 53779 ACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAG 53838 | ||||| || ||||||||||| ||||| || ||||| ||| |||||||| Sbjct 10925469 GCTTTTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAG 10925410 Query 53839 AATGAATGGCGTACCAGTTTCAA 53861 ||| | || || || ||||||| Sbjct 10925409 CATGTAAGGAGTTCCTGTTTCAA 10925387 Score = 104 bits (114), Expect = 3e-17 Identities = 124/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 ||||| || || |||||||||| | |||||| |||||| |||||||| || ||| Sbjct 10925204 TCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGAC 10925145 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 || | || | |||| |||||||||||||| |||||||| ||||| | ||| ||| || Sbjct 10925144 CATACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGC-ATAGAA 10925086 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT--ATTCTTTTTA 54112 || ||||| | ||||| ||| || || ||||| ||| || ||| Sbjct 10925085 TAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 10925041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 171/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC----CCATTGATG 54519 | ||| || | | |||||| || || |||||| || ||||| |||| |||| Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATG 10924464 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 | ||||| || | |||||||||||| || ||||||||||| | || | ||| Sbjct 10924463 G----CAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTAT 10924408 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 ||| | || || | |||| | || || |||||||| || || || |||||||| Sbjct 10924407 TTTTAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCT 10924348 Query 54640 TTCGTAAATAAT 54651 || ||||| || Sbjct 10924347 ATCATAAATTAT 10924336 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| |||| || || |||| |||| || |||| |||||||| || |||||||||||| Sbjct 10925956 CCTTCATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAGCTAGCCTCTAATGCA 10925897 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 || ||||| | || || || || | |||| || | |||||||||| || |||||| Sbjct 10925896 CCATAATATAGTGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAAT 10925837 Query 53504 GGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 ||||| ||| || |||| || ||||| | || |||| ||||| || Sbjct 10925836 GGATATCGCATTAAAAGGAAT----GCATCTGCAAGACCCTGAATTCCAATCCC 10925787 >seq15 Length=11467329 Score = 125 bits (138), Expect = 8e-24 Identities = 172/240 (72%), Gaps = 3/240 (1%) Strand=Plus/Minus Query 24394 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 24453 ||||| | | ||||||||||||||| | | |||||||| || || | ||||| |||| Sbjct 5182329 TATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGG 5182270 Query 24454 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTT 24513 | | |||||| || |||||||| | |||||||| | ||||||||| || |||||||| Sbjct 5182269 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGTT 5182210 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 | | | || ||||| || ||||| ||| || ||||| || || || ||||| || Sbjct 5182209 CGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 5182150 Query 24574 TAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC---TTTAGATATAT 24630 | |||| ||| || || ||| | |||||| ||| ||||| | |||||||| Sbjct 5182149 TGAAATGTTTCTCATCACTATTTAAATGATTCCAGTCAAATATATCCTGTGAAGATATAT 5182090 Score = 113 bits (124), Expect = 5e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 ||||||| | ||||||||| || || |||||||||||||| || || ||||||||||| | Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 24738 ||| |||||| | |||| || ||||| | |||||||||| |||||||| | || | Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTTTCTTTCAGTA 5181915 Query 24739 TTGGTTC 24745 |||||| Sbjct 5181914 ATGGTTC 5181908 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 23941 TTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCA 24000 ||| | | || ||||| | || |||||||| || ||||| || |||||| ||| | Sbjct 5183072 TTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACATAA 5183013 Query 24001 TTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAA 24060 | ||| ||||||||||| | || ||| || | ||| | || | |||||||||||||| Sbjct 5183012 GTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAATTCTTGTTCAA 5182953 Query 24061 TAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG--TGGATACAATAA 24118 | ||| || ||| | ||||| || | || || | ||| | |||||| Sbjct 5182952 TTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTTTGTACAAT-- 5182895 Query 24119 ATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCT 24159 |||||| ||||| |||||||||||||| || |||| |||| Sbjct 5182894 ATGTTTGAACATTAAACATGCGAAATCACAATGTAATCCCT 5182854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593679972694320