Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq10 163 4e-35 seq41 150 3e-31 seq14 131 3e-25 seq172 122 1e-22 seq382 104 4e-17 >seq10 Length=13618662 Score = 163 bits (180), Expect = 4e-35 Identities = 387/574 (67%), Gaps = 17/574 (3%) Strand=Plus/Minus Query 203113 ATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTC 203172 ||||| ||||||||||||||| |||||| || ||||| | | | |||||| ||||| Sbjct 10007020 ATGTTTATTTAGTGTTTTTATAGCCCAAGGATAGGCACCTTCAACAAGATCGTACTTTTC 10006961 Query 203173 ATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAAC 203232 |||||| ||||||||||||||| |||||| | | |||||||||||| || || Sbjct 10006960 ATTATAGAAACAAAAATTATCACTAAGTTCTCTTCTAATAATAGCTTCCTCCATGAAGGA 10006901 Query 203233 TTCTACCGATTTAGGATATAATTTTTTATATTTGTTAATTTCTAATATTATTCTTTGAGT 203292 ||| || ||||| ||| ||| |||||||| ||||| || || | ||| Sbjct 10006900 TTCAACTGATTTTTTATACAATCCTTTATATTCTCGTATTTCCAAAATACAACGTTGTAC 10006841 Query 203293 TGAAATTTGACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATTTGGATC 203352 ||| || ||||||||| | ||| |||||||||||||| || ||||| | |||| Sbjct 10006840 TGAGATCATACCAAAATGAAACCAAGGTGATAAATTACTGATGGCATTTGACAAAGGATT 10006781 Query 203353 ATTTCtttttttagcataatcttttaatctattttgtataaatatatctaatattttaaa 203412 ||| || | |||| | || ||| ||| |||||||| | || | | ||||| Sbjct 10006780 ATTATGTTCATCTCCATATTTTTGTAAGTGATTCTGTATAAAATTTTCAAGTTCTTTAAT 10006721 Query 203413 tgcatattttGTA-CCAGATTTTGCCCAAGAAA---CAGGTTTAACATTTCTATCAATAT 203468 ||| || | || || | ||| ||||| | || ||| | | || || | | Sbjct 10006720 ACCAT-TTCTATATCCTGGTTTAGCCCATGTAATTTCAGCTGTTGGCTTACTTGC---TT 10006665 Query 203469 TTAATGATTGTTCTGCttttttccaattattattt----attttaatatatgtattataa 203524 || ||| | | | | |||||| || ||| ||||| | | ||| ||| Sbjct 10006664 CTACATCTTGCAAAGTTATATCCCAATTGTTGTTTTCAAATTTTTCT-TTTGTTAAATAT 10006606 Query 203525 gtatgtttaataataggtataaattCAGTTAAATATTCTGATAATTTATAATTTATTTTA 203584 | || ||||||| ||| |||||| |||||| |||| || ||| |||||||||| Sbjct 10006605 GGGTGCTTAATAACAGGAGGAAATTCTGTTAAAAATTCCTGTAGTTTTGTATTTATTTTA 10006546 Query 203585 TTTCTAATGGTTTTTGCAG-AATATTCTAATTTATTACTAGCAATCCAACATGGTACAAT 203643 ||||| |||||||| |||| || | || ||| | | ||| ||| || || ||||| Sbjct 10006545 TTTCTGATGGTTTTAGCAGCAAACTCCTGTTTTGATGAT-GCATACCAGCAAGGCACAAT 10006487 Query 203644 ATTATGTGAATC-AACTTGATAAACATCAATATT 203676 |||||| | ||| | ||| | ||| || ||||| Sbjct 10006486 ATTATGAGCATCTATCTTTA-AAAGATGTATATT 10006454 Score = 156 bits (172), Expect = 6e-33 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 || ||||| ||||| ||||||| ||||| ||| || |||| |||||||| Sbjct 10007330 CCTACATAACCATTCGGATCACAACCATCGATACTGTACTTATTATTTAAATAATTGGCC 10007271 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 || || || |||| || ||||||||||||| |||||| |||||||||||| Sbjct 10007270 CATTCTAAAGCAATCTCAGGTGTTTCAGTCCATTCTAATAATTTTTTTGCCCAATACATT 10007211 Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047 ||||| ||||||||||||| || || |||||||| ||||| |||||||||||||| Sbjct 10007210 CTTAAGAATCCATGCATTTTTCCTGTTATTATCATTTGATTTTGACATGCATTCCATAAA 10007151 Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCA 203107 | ||||| ||| | ||||| | ||| |||| |||||||| |||||| ||||| Sbjct 10007150 TCATCATGTGTTTTAGAGTTTTCCAACTGACTTAAAGAATATATATATTTTCTTGTATCC 10007091 Query 203108 TT 203109 || Sbjct 10007090 TT 10007089 >seq41 Length=919255 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| || || ||||| ||||| |||||| | || ||||||| Sbjct 762535 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTC 762476 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| ||| ||| | ||| ||||||||||| || ||||| || || || || || Sbjct 762475 TGATACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 762416 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||| | || || || || |||||||| || ||| | || ||| | ||||| || Sbjct 762415 ACAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAA 762356 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||| ||||| |||||||| |||||| | || | ||| | |||||||| Sbjct 762355 TATACAAAAGGAATCAACCTTGCATCTTGTGCTTCGTCTTCGAGGTGG 762308 Score = 141 bits (156), Expect = 1e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || ||||| |||||||||||| | || ||||||| Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||||| || ||||| || || || || ||| Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAA 762643 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | || ||||| || |||||| | || ||| | || ||| | ||||||||| Sbjct 762642 CAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAAT 762583 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| ||||| ||| | ||| | ||| | ||| | |||| || || ||| || Sbjct 762582 ATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTGAGAGGAGGAATGCAAATTT 762525 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | |||||||| ||||| |||||||| || | || ||||||| Sbjct 762990 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 762931 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || | ||| ||||||||||| || ||||| || || || |||||| Sbjct 762930 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCGCCGGATCAA 762871 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||| | || ||||| ||||| ||| | || || | || || | ||||||||| Sbjct 762870 CAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAAT 762811 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||| ||||| ||| | ||| | || | || | || |||||||| ||| || Sbjct 762810 ATTCAAAAGGAATCGACTCTTCATCTTGTCCTTCGCCTTCGTGGTGGTATGCAAATTT 762753 >seq14 Length=11649563 Score = 131 bits (144), Expect = 3e-25 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 ||| || ||||| ||||||||||| | || ||||| |||||||||||||||||| || | Sbjct 1883801 AGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAG 1883860 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 ||| ||| ||||||||||||||| || ||||| || || ||||| || |||||||| | Sbjct 1883861 AACTTTATCAGATTATAATATTCAGAAGGAATCTACATTACATTTAGTGCTACGTTTAAG 1883920 Query 124760 AGGTGGTATTAAAAA 124774 |||||| |||||| Sbjct 1883921 AGGTGGAGCTAAAAA 1883935 >seq172 Length=1724251 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || | || || ||||| || || | || | |||||| Sbjct 1092221 ATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCA 1092280 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| ||||| ||||| || || || ||||| || ||||||||||| Sbjct 1092281 GATACTATTGAAAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTGATCAG 1092340 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||||||||| ||||| ||||| || ||| | || || | |||||||||| Sbjct 1092341 CAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAAT 1092400 Query 124719 ATTCAAAAAG 124728 |||||||||| Sbjct 1092401 ATTCAAAAAG 1092410 >seq382 Length=5783 Score = 104 bits (114), Expect = 4e-17 Identities = 178/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 205709 TATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAA 205768 |||||| ||||||||||| || || |||||| |||| | ||||||||| ||||||| Sbjct 1117 TATAATCTGTATCCATATTTTGGTACTTTGCACCATAATGTCTCCATTGAAATCCATAAA 1058 Query 205769 CTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatg 205828 | || |||||||| ||||||||||||| | || |||| | || | | || Sbjct 1057 CAGGTCCTAAATCTCCTTCTTTTCTATTTGTGAAGCCACAAGAGTCTAGGAACTCACGTG 998 Query 205829 atccattttcatcccaaatatgga-ttcctttattttttaGAATATTT-GTATTAGTTGA 205886 | | ||| ||||||| || |||| |||||| | ||| | | ||| | ||| || || Sbjct 997 AACTGTTTGCATCCCATATGTGGACATCCTTT-TGACTTA-ATTCTTTGGCATTTGTCGA 940 Query 205887 TCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGT 205946 ||| ||||||||||| || || || || | || |||||||| | | ||||| || Sbjct 939 TCCTCTAATAAACCATAACAACTCCTCCACTACGCCCCTCCAAAATACTCGCTTTGTAGT 880 Query 205947 AAATAATGGAAAT 205959 | ||||| ||| Sbjct 879 TAGCAATGGGAAT 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755403033091200