Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03]
5,609 sequences; 248,654,244 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq10 163 4e-35
seq41 150 3e-31
seq14 131 3e-25
seq172 122 1e-22
seq382 104 4e-17
>seq10
Length=13618662
Score = 163 bits (180), Expect = 4e-35
Identities = 387/574 (67%), Gaps = 17/574 (3%)
Strand=Plus/Minus
Query 203113 ATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATTATCGTAATTTTC 203172
||||| ||||||||||||||| |||||| || ||||| | | | |||||| |||||
Sbjct 10007020 ATGTTTATTTAGTGTTTTTATAGCCCAAGGATAGGCACCTTCAACAAGATCGTACTTTTC 10006961
Query 203173 ATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAAAAC 203232
|||||| ||||||||||||||| |||||| | | |||||||||||| || ||
Sbjct 10006960 ATTATAGAAACAAAAATTATCACTAAGTTCTCTTCTAATAATAGCTTCCTCCATGAAGGA 10006901
Query 203233 TTCTACCGATTTAGGATATAATTTTTTATATTTGTTAATTTCTAATATTATTCTTTGAGT 203292
||| || ||||| ||| ||| |||||||| ||||| || || | |||
Sbjct 10006900 TTCAACTGATTTTTTATACAATCCTTTATATTCTCGTATTTCCAAAATACAACGTTGTAC 10006841
Query 203293 TGAAATTTGACCAAAATGTATCCATGGTGATAAATTACTTATTGCATTAGCATTTGGATC 203352
||| || ||||||||| | ||| |||||||||||||| || ||||| | ||||
Sbjct 10006840 TGAGATCATACCAAAATGAAACCAAGGTGATAAATTACTGATGGCATTTGACAAAGGATT 10006781
Query 203353 ATTTCtttttttagcataatcttttaatctattttgtataaatatatctaatattttaaa 203412
||| || | |||| | || ||| ||| |||||||| | || | | |||||
Sbjct 10006780 ATTATGTTCATCTCCATATTTTTGTAAGTGATTCTGTATAAAATTTTCAAGTTCTTTAAT 10006721
Query 203413 tgcatattttGTA-CCAGATTTTGCCCAAGAAA---CAGGTTTAACATTTCTATCAATAT 203468
||| || | || || | ||| ||||| | || ||| | | || || | |
Sbjct 10006720 ACCAT-TTCTATATCCTGGTTTAGCCCATGTAATTTCAGCTGTTGGCTTACTTGC---TT 10006665
Query 203469 TTAATGATTGTTCTGCttttttccaattattattt----attttaatatatgtattataa 203524
|| ||| | | | | |||||| || ||| ||||| | | ||| |||
Sbjct 10006664 CTACATCTTGCAAAGTTATATCCCAATTGTTGTTTTCAAATTTTTCT-TTTGTTAAATAT 10006606
Query 203525 gtatgtttaataataggtataaattCAGTTAAATATTCTGATAATTTATAATTTATTTTA 203584
| || ||||||| ||| |||||| |||||| |||| || ||| ||||||||||
Sbjct 10006605 GGGTGCTTAATAACAGGAGGAAATTCTGTTAAAAATTCCTGTAGTTTTGTATTTATTTTA 10006546
Query 203585 TTTCTAATGGTTTTTGCAG-AATATTCTAATTTATTACTAGCAATCCAACATGGTACAAT 203643
||||| |||||||| |||| || | || ||| | | ||| ||| || || |||||
Sbjct 10006545 TTTCTGATGGTTTTAGCAGCAAACTCCTGTTTTGATGAT-GCATACCAGCAAGGCACAAT 10006487
Query 203644 ATTATGTGAATC-AACTTGATAAACATCAATATT 203676
|||||| | ||| | ||| | ||| || |||||
Sbjct 10006486 ATTATGAGCATCTATCTTTA-AAAGATGTATATT 10006454
Score = 156 bits (172), Expect = 6e-33
Identities = 177/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927
|| ||||| ||||| ||||||| ||||| ||| || |||| ||||||||
Sbjct 10007330 CCTACATAACCATTCGGATCACAACCATCGATACTGTACTTATTATTTAAATAATTGGCC 10007271
Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987
|| || || |||| || ||||||||||||| |||||| ||||||||||||
Sbjct 10007270 CATTCTAAAGCAATCTCAGGTGTTTCAGTCCATTCTAATAATTTTTTTGCCCAATACATT 10007211
Query 202988 CTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAA 203047
||||| ||||||||||||| || || |||||||| ||||| ||||||||||||||
Sbjct 10007210 CTTAAGAATCCATGCATTTTTCCTGTTATTATCATTTGATTTTGACATGCATTCCATAAA 10007151
Query 203048 TTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCA 203107
| ||||| ||| | ||||| | ||| |||| |||||||| |||||| |||||
Sbjct 10007150 TCATCATGTGTTTTAGAGTTTTCCAACTGACTTAAAGAATATATATATTTTCTTGTATCC 10007091
Query 203108 TT 203109
||
Sbjct 10007090 TT 10007089
>seq41
Length=919255
Score = 150 bits (166), Expect = 3e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| |||| || || ||||| ||||| |||||| | || |||||||
Sbjct 762535 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTC 762476
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| | ||| ||||||||||| || ||||| || || || || ||
Sbjct 762475 TGATACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCA 762416
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
||| ||| | || || || || |||||||| || ||| | || ||| | ||||| ||
Sbjct 762415 ACAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAA 762356
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765
||| ||||| |||||||| |||||| | || | ||| | ||||||||
Sbjct 762355 TATACAAAAGGAATCAACCTTGCATCTTGTGCTTCGTCTTCGAGGTGG 762308
Score = 141 bits (156), Expect = 1e-28
Identities = 174/238 (73%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || | ||||| || ||||| |||||||||||| | || |||||||
Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| || | ||| ||||||||||| || ||||| || || || || |||
Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAA 762643
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||| | || ||||| || |||||| | || ||| | || ||| | |||||||||
Sbjct 762642 CAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGATGGACGTACACTCTCTGATTATAAT 762583
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||||| ||||| ||| | ||| | ||| | ||| | |||| || || ||| ||
Sbjct 762582 ATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTGAGAGGAGGAATGCAAATTT 762525
Score = 127 bits (140), Expect = 3e-24
Identities = 171/238 (72%), Gaps = 0/238 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || || | |||||||| ||||| |||||||| || | || |||||||
Sbjct 762990 ATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 762931
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| || | ||| ||||||||||| || ||||| || || || ||||||
Sbjct 762930 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCGCCGGATCAA 762871
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|||||| | || ||||| ||||| ||| | || || | || || | |||||||||
Sbjct 762870 CAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTATAAT 762811
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776
|||||||| ||||| ||| | ||| | || | || | || |||||||| ||| ||
Sbjct 762810 ATTCAAAAGGAATCGACTCTTCATCTTGTCCTTCGCCTTCGTGGTGGTATGCAAATTT 762753
>seq14
Length=11649563
Score = 131 bits (144), Expect = 3e-25
Identities = 110/135 (81%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699
||| || ||||| ||||||||||| | || ||||| |||||||||||||||||| || |
Sbjct 1883801 AGGAATTCCACCAGATCAACAAAGATTAATCTTTGCTGGAAAACAATTAGAGGATGGTAG 1883860
Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759
||| ||| ||||||||||||||| || ||||| || || ||||| || |||||||| |
Sbjct 1883861 AACTTTATCAGATTATAATATTCAGAAGGAATCTACATTACATTTAGTGCTACGTTTAAG 1883920
Query 124760 AGGTGGTATTAAAAA 124774
|||||| ||||||
Sbjct 1883921 AGGTGGAGCTAAAAA 1883935
>seq172
Length=1724251
Score = 122 bits (134), Expect = 1e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | || || | || || ||||| || || | || | ||||||
Sbjct 1092221 ATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCA 1092280
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||| ||| ||| ||||| ||||| || || || ||||| || |||||||||||
Sbjct 1092281 GATACTATTGAAAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTGATCAG 1092340
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
||| | ||||||||||| ||||| ||||| || ||| | || || | ||||||||||
Sbjct 1092341 CAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAAT 1092400
Query 124719 ATTCAAAAAG 124728
||||||||||
Sbjct 1092401 ATTCAAAAAG 1092410
>seq382
Length=5783
Score = 104 bits (114), Expect = 4e-17
Identities = 178/253 (70%), Gaps = 4/253 (2%)
Strand=Plus/Minus
Query 205709 TATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAA 205768
|||||| ||||||||||| || || |||||| |||| | ||||||||| |||||||
Sbjct 1117 TATAATCTGTATCCATATTTTGGTACTTTGCACCATAATGTCTCCATTGAAATCCATAAA 1058
Query 205769 CTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttatatattttaatg 205828
| || |||||||| ||||||||||||| | || |||| | || | | ||
Sbjct 1057 CAGGTCCTAAATCTCCTTCTTTTCTATTTGTGAAGCCACAAGAGTCTAGGAACTCACGTG 998
Query 205829 atccattttcatcccaaatatgga-ttcctttattttttaGAATATTT-GTATTAGTTGA 205886
| | ||| ||||||| || |||| |||||| | ||| | | ||| | ||| || ||
Sbjct 997 AACTGTTTGCATCCCATATGTGGACATCCTTT-TGACTTA-ATTCTTTGGCATTTGTCGA 940
Query 205887 TCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAACATTGATTTTGTTGT 205946
||| ||||||||||| || || || || | || |||||||| | | ||||| ||
Sbjct 939 TCCTCTAATAAACCATAACAACTCCTCCACTACGCCCCTCCAAAATACTCGCTTTGTAGT 880
Query 205947 AAATAATGGAAAT 205959
| ||||| |||
Sbjct 879 TAGCAATGGGAAT 867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755403033091200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |