Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 122 8e-23 seq41 89.7 4e-13 >seq1 Length=17153651 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | ||||||||| || ||| ||||||||||||| || ||||| ||||| Sbjct 7345290 CCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAA 7345231 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || || ||||| ||||| |||| | ||||||||| || ||||| Sbjct 7345230 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7345171 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || ||||| |||||| || ||| |||||| | || | ||||| | ||| || || Sbjct 7345170 ATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCT-TCAAC 7345112 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | ||||| || || | ||||| || || ||||||||| Sbjct 7345111 TTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATG 7345063 >seq41 Length=919255 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || ||||| || |||||||| | |||||| ||| || | ||||| ||| Sbjct 762338 GTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCA 762397 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | | ||| || || ||||| || || ||||||||| ||||||| ||| Sbjct 762398 GCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTC 762457 Query 118662 ACCTGTTCGACGGTGTCCGT-GCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | || || | ||| || || || | || | ||||| || || || || Sbjct 762458 ACATTCTCAATAGTATCAGAAGCT-TCAACTTCAAGAGTTATTGTTTTTCCTGTAAGGGT 762516 Query 118721 TTTTACAAAAATCTGCAT 118738 |||||||||||| ||||| Sbjct 762517 TTTTACAAAAATTTGCAT 762534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433800743489428