Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq10 104 4e-17 seq9 100 5e-16 >seq10 Length=13618662 Score = 104 bits (114), Expect = 4e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 189386 AATGATCCTAGAAAGTATATATATTCCATTAAACAACTCGAAAAAGCGGAAACTCATGAT 189445 || ||| | ||||| ||||||||||| | | || | ||||| | |||| |||||| Sbjct 10007089 AAGGATACAAGAAAATATATATATTCTTTAAGTCAGTTGGAAAACTCTAAAACACATGAT 10007148 Query 189446 CCTCTATGGAACGCGTCACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTA 189505 | ||||||| || | |||| || ||| | | | ||||||||||||| | || ||| Sbjct 10007149 GATTTATGGAATGCATGTCAAAATCAAATGATAATAACAGGAAAAATGCATGGATTCTTA 10007208 Query 189506 CGAATGTATTGGGCTAAGAAGATACTTGAATGGACTAGAACACCTGA 189552 ||||||||||||| || || || | ||||||||| ||||||||| Sbjct 10007209 AGAATGTATTGGGCAAAAAAATTATTAGAATGGACTGAAACACCTGA 10007255 >seq9 Length=15655298 Score = 100 bits (110), Expect = 5e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 135636 CGATCCTGTTTTGCATATAGAACTTAGGAGA-TGGGCGGATGTTTTTATTATAGCGCCCT 135694 ||||||||| || ||||| || || || | | ||||| ||| | ||| | || || || Sbjct 14510000 CGATCCTGTATTACATATTGATCT-AGTAAAGTGGGCTGATTTATTTTTAATCGCTCCAC 14510058 Query 135695 TAACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTA 135754 || || ||||| | | |||||||| | ||| |||||||||||| | | || | | Sbjct 14510059 TAGATGCCAATACTCTTGGTAAAATAGCCAGTGGCATATGCGATAATATCTTAACTTGTG 14510118 Query 135755 TTGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTA 135814 | | | | ||||||||| || || || | ||||| |||||||| |||||||| | Sbjct 14510119 TCGCACGTGCCTGGGATCCACTGAAGCCTTTGATTTTTTGTCCTGCCATGAATACAAAAA 14510178 Query 135815 TGTGGGAACATCCTATTAC 135833 |||||||||| ||| |||| Sbjct 14510179 TGTGGGAACACCCTGTTAC 14510197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923132072364360