Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9 120 3e-22 seq16 116 4e-21 seq8 111 2e-19 seq17 105 8e-18 seq4 96.9 4e-15 seq41 91.5 2e-13 >seq9 Length=15655298 Score = 120 bits (132), Expect = 3e-22 Identities = 75/81 (93%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 8164610 AAAAATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 8164551 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 8164550 TGACCACTATACTACCGAGGA 8164530 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 8161257 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTG 8161198 Query 60126 TACTACCGAGGATT 60139 ||||| |||||||| Sbjct 8161197 TACTAACGAGGATT 8161184 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 3/83 (4%) Strand=Plus/Minus Query 60058 AAAATTT---TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| ||||| || | |||| |||||||| ||||||||||||||||||||| || Sbjct 7057972 AAAATTTAATTCTCCCCGACGGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 7057913 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||| |||||||| |||||| Sbjct 7057912 ACTGACCGCTATACTATCGAGGA 7057890 >seq16 Length=5274633 Score = 116 bits (128), Expect = 4e-21 Identities = 90/106 (85%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 3134818 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3134759 Query 60117 TCACCACTATACTACCGAGGATTGAATATAT--AACTTGAATATTA 60160 | |||||||||||||||||||||| ||| || ||||| || ||| Sbjct 3134758 TGACCACTATACTACCGAGGATTGGATAAATGGAACTTCTATTTTA 3134713 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3133523 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3133464 Query 60126 TACTACCGAGGATTGAATAT 60145 |||||||||||| | |||| Sbjct 3133463 TACTACCGAGGAATCTATAT 3133444 >seq8 Length=9733834 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 5715135 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 5715194 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 5715195 TGACCACTATACTACCGAGGA 5715215 >seq17 Length=3558169 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 775328 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 775387 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 775388 ATACTACCGAGGA 775400 >seq4 Length=14241696 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4776316 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 4776257 Query 60125 ATACTACCGAGGA-TTGAAT 60143 ||||| |||||| |||||| Sbjct 4776256 GTACTAACGAGGATTTGAAT 4776237 >seq41 Length=919255 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||| | ||| | |||||| || |||||||| ||||||||||||| Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAA 762367 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || | || ||||||||||| || | | ||| ||||| | || Sbjct 762368 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGA 762427 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| |||||| ||| | || | | || || | ||| || Sbjct 762428 ATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAAC 762486 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | || || ||||| || || || || |||||||| ||||||||| Sbjct 762487 TTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571777508438520