Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq14 125 1e-23 seq1 122 1e-22 seq172 107 3e-18 seq41 105 1e-17 seq13 84.2 3e-11 >seq14 Length=11649563 Score = 125 bits (138), Expect = 1e-23 Identities = 104/127 (82%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||||||||| | | || || |||||||| |||||||| || |||||||||||||| Sbjct 1883927 TCCACCTCTTAAACGTAGCACTAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGA 1883868 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||||| | ||| |||||||||||||||||||| || |||||||| ||||| || || Sbjct 1883867 TAAAGTTCTACCATCCTCTAATTGTTTTCCAGCAAAGATTAATCTTTGTTGATCTGGTGG 1883808 Query 146170 AATTCCT 146176 ||||||| Sbjct 1883807 AATTCCT 1883801 >seq1 Length=17153651 Score = 122 bits (134), Expect = 1e-22 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| || || ||||| ||||| ||||| || |||||||| | Sbjct 7345292 TTCCTCCGCGAAGTCTCAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCG 7345233 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||| |||||| |||||||| ||||| | ||||| || |||| Sbjct 7345232 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7345173 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| || ||||| ||||| || || ||| ||| | Sbjct 7345172 GAATACCCTCTTTGTCTTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAA 7345113 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGA 146286 |||| || || || ||||| |||||||| ||||||| ||| || ||||| || |||| Sbjct 7345112 CTTCAAGAGTAATAGTTTTCCCTGTTAAGGTTTTAACGAAGATCTGCATGTTGCTAGA 7345055 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| || || ||||| | || || ||||| || |||||||||| Sbjct 7345520 TTCCTCCACGAAGTCTCAACACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 7345461 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||| |||||| |||||||| ||||| | ||||| || |||| Sbjct 7345460 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7345401 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||| || || Sbjct 7345400 GAATACCCTCTTTTTCATG 7345382 Score = 100 bits (110), Expect = 4e-16 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 23992 ACTTTTTGAATAAAATCTTTGCCTTTTACAAGTTTAACATAATCACATTTATCAAACCAT 24051 ||| ||||| |||| |||| ||| ||||||| || ||| | || |||||| ||||||| Sbjct 4473993 ACTGTTTGA-TAAACTCTTGCCCTCTTACAAGATTCACAAATTCGCATTTAGGAAACCAT 4473935 Query 24052 CTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAA 24111 ||||| |||| |||| | |||||| || |||||| || ||||||||||||||| Sbjct 4473934 CTTGCATGTTCAGTCCATGCATCATCTGTTGCTTCCCAATTTCGTAAACCACCATCACAG 4473875 Query 24112 TAAAAGCATTTAACTTTATCAC 24133 | ||| ||| |||| | |||| Sbjct 4473874 TGAAAACATCTAACATGGTCAC 4473853 Score = 96.9 bits (106), Expect = 5e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 24000 AATAAAATCTTTGCCTTTTACAAGTTTAACATAATCACATTTATCAAACCATCTTGCGTG 24059 |||| |||||| |||| || | | | |||| |||||| |||||| ||||||| Sbjct 4481582 AATATAATCTTGCCCTTGCACCATTAATAAATAACAGCATTTAGAAAACCACTTTGCGTG 4481523 Query 24060 TTGTATCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAATAAAAGCA 24119 |||| |||||||||||| |||| |||||| | ||||||||||| |||| | | || Sbjct 4481522 TTGTTCCCAAGGATCATCTTCTGGTTCCCAATCTTTTAAACCACCTCCACAGTGGTAACA 4481463 Query 24120 TTTAACTTTATCACTTTTTCCAGTATAAAAGAATCCAGCTTCTGCTAGTTTTTCTGTAGA 24179 || |||| ||| ||||||||||| || || || || |||| || |||| | | Sbjct 4481462 CAGGGTTTGGTCACCTTTCCCAGTATAAAAAAAGCCTGCATCGGCTAATTGTTCTTTTGT 4481403 Query 24180 AATAGGCATTGAAATAGGCCA 24200 ||||| || ||||||| Sbjct 4481402 TTGTGGCATAGATTTAGGCCA 4481382 Score = 86.0 bits (94), Expect = 9e-12 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 24005 AATCTTTGCCTTTTACAAGTTTAACATA-ATCA-CATTTATCAAACCATCTTGCGTGTTG 24062 |||||| |||| || | |||| ||| | || |||||| |||| || |||| ||||| Sbjct 4469461 AATCTTGCCCTTGCACGA--TTAATATATAACAGCATTTAGAAAACAATTTTGCATGTTG 4469404 Query 24063 TATCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAATAAAAGCATTT 24122 |||||||||||| |||| |||||| | || |||||||| |||| | | | || Sbjct 4469403 CTCCCAAGGATCATCTTCTGGTTCCCAATCTTTCAAACCACCTCCACAGTGATAACACAA 4469344 Query 24123 AACTTTATCACTTTTTCCAGTATAAAAGAATCCAGCTTCTGCTAGTTTTTCTGTAGAAAT 24182 || |||| ||| ||||||||||| || || || || |||| || |||| | | Sbjct 4469343 GGTTTGGTCACCTTTCCCAGTATAAAAAAAGCCTGCATCGGCTAATTGTTCTTTTGTTTG 4469284 Query 24183 AGGCATTGAAATAGGCCA 24200 ||||| || ||||||| Sbjct 4469283 TGGCATAGATTTAGGCCA 4469266 >seq172 Length=1724251 Score = 107 bits (118), Expect = 3e-18 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 |||||||||||||| ||||| | | ||| || ||||| |||||||||||||| | | | Sbjct 1092402 ATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATAAGACGT 1092343 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 |||||||| || ||||||||||| || || || |||| Sbjct 1092342 TGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTTTCAATAGTA 1092283 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| ||||||||| || ||||| |||||||| || || ||||| | ||||| ||| Sbjct 1092282 TCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAATATCTGC 1092223 Query 146276 ATTTT 146280 || || Sbjct 1092222 ATCTT 1092218 >seq41 Length=919255 Score = 105 bits (116), Expect = 1e-17 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | | || | ||| | ||| ||||| ||| || ||||||||||| || Sbjct 762764 CCACCACGAAGGCGAAGGACAAGATGAAGAGTCGATTCCTTTTGA-ATATTATAATCGGA 762822 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | || || | ||| ||||||||||| ||||| ||||| |||||||| || Sbjct 762823 GAGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAGATCAACCTTTGTTGATCCGGCGG 762882 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||||||||| || ||||| |||||| ||| ||| || Sbjct 762883 AATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCAAC 762942 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| |||||||| ||||| ||||| | ||| || | ||| || ||||| Sbjct 762943 TTCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 762990 Score = 104 bits (114), Expect = 3e-17 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| ||| | | || | ||| || || ||||| || |||||| ||||| ||| Sbjct 762308 CCACCTCGAAGACGAAGCACAAGATGCAAGGTTGATTCCTTTTGTATATTGTAATCAGAA 762367 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || |||||||| ||||| || ||||| || || || || |||||| Sbjct 762368 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAGATCAACCTCTGTTGGTCTGGAGGA 762427 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || ||||| |||||| ||| ||| ||| Sbjct 762428 ATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTCTCAATAGTATCAGAAGCTTCAACT 762487 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || || |||||||| ||||| | ||||| | || ||||||||| Sbjct 762488 TCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 762535 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/230 (68%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| ||||| || | | || | ||| | ||| ||||| ||| || ||||||||||| Sbjct 762534 TTCCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGA-ATATTATAATCA 762592 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || || || | | ||| || | |||||| |||||||| ||||| ||||| || || ||| Sbjct 762593 GAGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGA 762652 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 || |||||||| || ||||| |||||| ||| ||| Sbjct 762653 GGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATAGTATCGGAAGCTTCA 762712 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || || ||||| ||||| | || || | ||| |||||||| Sbjct 762713 ACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCAT 762762 >seq13 Length=9884808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 10522 ATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATA 10581 |||||||||||||||||||| | |||||||||| |||||| || || | || Sbjct 6011509 ATAGAGGAAATGTGGGAGTAGTGCTATTTAATCACAGTAATGAGGACTTCAAGATCGCAG 6011450 Query 10582 GAGGAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAATGTTAAAAG 10641 ||| ||| | ||| | |||||||| ||||||||||| ||||||| || | | | | Sbjct 6011449 CAGGTGATCGTATAGCCCAATTAATTTGTGAAAAAATAATATATCCAGAACTTCAAGAGG 6011390 Query 10642 TCGATAGTTTA 10652 | ||||||||| Sbjct 6011389 TAGATAGTTTA 6011379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743474269505280