Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq15 96.9 3e-15 >seq15 Length=11467329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 16285 AAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACC 16344 ||||||||| |||||||||| |||| |||||| | ||| || ||||| ||||| ||| Sbjct 5182633 AAATGTAAGTCCTGGCATTAAACCTCTTTTTTTCAGCCAGAAAATAGCAGCAAAACTACC 5182574 Query 16345 AGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCA 16390 |||||| |||||||| ||||| ||||||||||||| || ||| Sbjct 5182573 GCTAAAGAAAATACCTTCCACTGCAGCAAATGCAACCACACGTTCA 5182528 Score = 86.0 bits (94), Expect = 6e-12 Identities = 125/174 (72%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 16490 TCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTC 16549 |||||| ||||| ||||| ||||| || | | | ||||||||||| || | ||| Sbjct 5182336 TCTTTGGTATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTT 5182277 Query 16550 TCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTA 16608 || || || | ||||||||||| || || | || |||| || ||||||||| || | Sbjct 5182276 TCTATGGCGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACT- 5182218 Query 16609 AAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 ||| | ||| | | ||| || ||||| |||||||| ||| ||||| || || Sbjct 5182217 AAATCGTTCGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGC 5182164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462479572127400