Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq382 98.7 8e-16 >seq382 Length=5783 Score = 98.7 bits (108), Expect = 8e-16 Identities = 183/266 (69%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 20039 ATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTAT 20098 ||| ||| || || ||||||| || || |||||||||| ||||| || || ||||| | Sbjct 863 ATGTATTCCCATTGCTAACTACAAAGCGAGTATTTTGGAGGGGCGTAGTGGAGGAGTTGT 922 Query 20099 TATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGA-GTTAAGATT 20157 |||||||||||| |||||| |||||| | | || || ||||||| || | || Sbjct 923 TATGGTTTATTAGAGGATCGACAAATGCCAAAGA-ATTAAGTCAAAAGGATGTCCACATA 981 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 ||| ||| | | || | || || || ||| || || | |||| Sbjct 982 TGGGATGCAAACAGTTCACGTGAGTTCCTAGACTCTTGTGGCTTCACAAATAGAAAAGAA 1041 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || ||||| || ||||| |||||||||||||||||||||| ||| || | || | Sbjct 1042 GGAGATTTAGGACCTGTTTATGGATTTCAATGGAGACATTATGGTGCAAAGTACCAAAAT 1101 Query 20278 ATGAACACAAATTATTTTGGACAAGG 20303 ||| | ||| ||||| ||||||||| Sbjct 1102 ATGGATACAGATTATAGTGGACAAGG 1127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399156711906505