Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 1e-13 >seq15 Length=11467329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 129/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 14457 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14516 ||||||| ||| || || ||||||||||| | | |||||||| ||||| | | Sbjct 5182338 TCTCTTTGGTATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACAT 5182279 Query 14517 TTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-TGAG 14575 |||| || || | ||||||||||| ||||| | || || | |||||| || ||| Sbjct 5182278 TTTCTATGGCGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGAC 5182219 Query 14576 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14634 | ||||| |||| | | || |||||||| || |||||| ||| ||||| ||||| || Sbjct 5182218 T-AAATCGTTCGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAA 5182161 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 ||||||||||| |||||| || || |||||| | ||||||||| || |||| ||||| Sbjct 5182661 CCTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTT 5182602 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| || || ||||| || ||| |||||| || || || ||||||||||| | Sbjct 5182601 TCAGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATG 5182542 Query 14346 C 14346 | Sbjct 5182541 C 5182541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482311781544120