Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq41 82.4 6e-11 >seq41 Length=919255 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 |||||||| ||||| || ||||| || | | ||| | ||||||||||||||| || Sbjct 762338 GTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCA 762397 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TT 18247 || |||| | || ||||| || || | |||||||| || ||||| |||| || Sbjct 762398 GCGAAGATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTT-TTGCTTT 762456 Query 18248 GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | ||| ||| ||| | || ||||| || || |||| || || | || Sbjct 762457 CACATTCTCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTGTTTTTCCTGTAAGGGT 762516 Query 18308 TTTTACAAAAATTTGCATT 18326 ||||||||||||||||||| Sbjct 762517 TTTTACAAAAATTTGCATT 762535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379318068162705