Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 >seq1 Length=17153651 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 24825 TAACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGA 24884 || || ||||||||| || |||||||||||||| || ||||| || || | || || || Sbjct 7345057 TAGCAACATGCAGATCTTCGTTAAAACCTTAACAGGGAAAACTATTACTCTTGAAGTTGA 7345116 Query 24885 ATCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGT 24944 | | |||| |||| | |||||| | ||| || | ||||| || | || Sbjct 7345117 AGCTTCTGACACAATAGAGAATGTTAAAGCAAAGATCCAAGACAAAGAGGGTATTCCTCC 7345176 Query 24945 TGACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGA 25004 |||||||| ||||| || | ||| ||||||||||| |||||| | ||| | || Sbjct 7345177 AGACCAGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCGGA 7345236 Query 25005 TTACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 ||| | ||| ||||||||| | || ||||||||||| || | |||||||| Sbjct 7345237 TTATAACATCCAGAAAGAGTCTACAAGCCATTTAGTGTTGAGACTTCGCGGAGG 7345290 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| | ||||||||| | || || ||| | || ||| | || || || | Sbjct 7345292 ATGCAGATCTCTGTTAAAACGCTTACTGGTAAAGCCATTACCTTGGAAGTTGATGTTCCC 7345351 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||| | ||| || | || || || |||||| || | || |||||| Sbjct 7345352 GACACAATAGAGAATGTGAAAGCTAAGATCCATGAAAAAGAGGGTATTCCTCCAGACCAG 7345411 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||||| || | ||| ||||||||||| |||||| | ||| | ||||| | | Sbjct 7345412 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7345471 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 || ||||||||| |||| || ||||||||||| || | || ||||| Sbjct 7345472 ATCCAGAAAGAGTCCACACTCCATTTAGTGTTGAGACTTCGTGGAGG 7345518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418275404869280