Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq41 120 3e-22 seq15 114 1e-20 seq172 100 3e-16 >seq41 Length=919255 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || ||||| ||||| || || | || |||||| | ||| Sbjct 762762 ATGCAAATTTTCGTCAAGACCCTTACAGGGAAAACTATAACTCTTGAAGTTGAAGCTTCC 762703 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| | ||| ||||||||||| | || || ||||| Sbjct 762702 GATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGACCAA 762643 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | | || || ||||| ||||| ||||||| | | | || | |||||||| Sbjct 762642 CAAAGGTTGATCTTTGCTGGTAAACAACTGGAAGA-TGGACGTACACTCTCTGATTATAA 762584 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||||||||||||||| || ||| | ||||| || || Sbjct 762583 TATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTGAGAGGAGG 762536 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| || ||||| ||||| |||||||| ||||| ||||| | || |||||| | Sbjct 762994 AATCATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACACTTGAAGTTGAAGC 762935 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||||| | | | || | || ||| | ||| ||||||||||| | ||||| || Sbjct 762934 TTCCGATACTATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCGCCGGA 762875 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || || | | || || ||||| || || | |||||| || | |||||| Sbjct 762874 TCAACAAAGGTTGATCTTTGCTGGAAAGCAACTTGAAGACGGACGTACGCTCTCCGATTA 762815 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| |||||||| ||||||||||||||||| || ||| | || | || |||| Sbjct 762814 TAATATTCAAAAGGAATCGACTCTTCATCTTGTCCTTCGCCTTCGTGGTGGTA 762762 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| ||||| || || ||||| ||||| || || | || |||||| | || Sbjct 762534 ATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACAATAACTCTTGAAGTTGAAGCTTCT 762475 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| | ||| ||||||||||| | || || ||||| Sbjct 762474 GATACTATTGAGAATGTGAAAGCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGACCAA 762415 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| ||||| |||||||| || | ||||| || Sbjct 762414 CAGAGGTTGATCTTCGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAAT 762355 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || ||||| ||||| || | ||||| || ||| Sbjct 762354 ATACAAAAGGAATCAACCTTGCATCTTGTGCTT 762322 >seq15 Length=11467329 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 57668 TGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAA 57727 ||||| | |||| || || || || || || || || || || ||||| || ||||| Sbjct 5182136 TGAGAAACATTTCATATCTCATGTCTTAGCATTCTTTGCGGCTTCTGATGGAATCGTTAA 5182195 Query 57728 CGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTA 57787 ||||| | |||||| ||||| |||||||| ||||| || ||||| | || || || Sbjct 5182196 TGAGAACCTCGTCGAACGATTTAGTCAAGAAGTACAAGTAACCGAGGCACGTTGTTTCTA 5182255 Query 57788 CGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATAC 57847 || |||||||| ||||| ||||| ||||| ||||||||||| || | | || ||||| Sbjct 5182256 TGGTTTTCAAGTCGCCATAGAAAATGTGCACTCAGAAATGTACTCTATGTTGATTGATAC 5182315 Query 57848 GTA 57850 || Sbjct 5182316 ATA 5182318 Score = 109 bits (120), Expect = 5e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 |||||| | || |||| ||||| ||||||||||| | ||||| || ||| || ||| Sbjct 5181908 GAACCATTACTGAAAGAAAATCCACGTAGATTTGTTGTCTTTCCTATCCAATGGCCTGAC 5181967 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | ||||| ||||| || |||||||| |||||||| ||||| ||||| || || Sbjct 5181968 ATTTGGCAAATGTATAAAAAAGCTGAAGCATCATTTTGGACTGTCGAGGAAGTGGATCTT 5182027 Query 57630 TCTAA 57634 ||||| Sbjct 5182028 TCTAA 5182032 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392 ||||||| |||||||||||| | | ||||| | || || ||||| ||||||||||||| Sbjct 5183168 AAAATCCATTTGATTTTATGGAGCACATCTCTTTAGAAGGTAAGACGAACTTTTTCGAAA 5183227 Query 58393 aaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 | ||||| | || |||||||||| || || ||| Sbjct 5183228 AGAAAGTAGGAGAGTATCAAAAATGGGGAGTAATG 5183262 >seq172 Length=1724251 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || || ||| |||| || ||||| |||||| | || || ||| | Sbjct 1092218 AAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCA 1092277 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | | | |||| || ||| | ||| |||||||||||| | || || || Sbjct 1092278 TCAGATACTATTGAAAATGTAAAAGCTAAAATCCAGGACAAGGAAGGAATTCCACCTGAT 1092337 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| ||||| || || ||||| || || |||||||| | | | ||| || ||||| Sbjct 1092338 CAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGA-TGGACGTACTCTGTCAGATTA 1092396 Query 31369 TAACATTCAAAAAG 31382 ||| |||||||||| Sbjct 1092397 TAATATTCAAAAAG 1092410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445735146203280