Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 seq15 109 7e-19 >seq6 Length=12724418 Score = 141 bits (156), Expect = 1e-28 Identities = 218/306 (71%), Gaps = 4/306 (1%) Strand=Plus/Minus Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 10924958 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 10924899 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | |||| || | ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 10924898 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 10924839 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCT-CCA 63518 |||| | ||||||||| | ||| || |||| |||| ||||| | || | | | || Sbjct 10924838 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTAT-TGGTGTGCCT 10924780 Query 63519 CTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63577 || || |||||| | || | | || || || || || || ||| || | ||| Sbjct 10924779 CTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTGC 10924721 Query 63578 GCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAA 63637 |||| |||||| || ||||| || || |||||||||||||| |||| | |||| ||| Sbjct 10924720 ACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAAA 10924661 Query 63638 ACAGCT 63643 ||| || Sbjct 10924660 ACAACT 10924655 Score = 131 bits (144), Expect = 2e-25 Identities = 182/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 62316 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 62375 ||||| ||| || || | |||| ||| | | ||| || || | | ||| | | | Sbjct 10926363 ATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCTTTCAGTCAGATCTCGTAATAAA 10926304 Query 62376 TGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62435 || || || || ||||| || ||||||||||| ||||| | | ||||||||||||||| Sbjct 10926303 TGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCATAAATATTACTGGTA 10926244 Query 62436 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62495 || ||||| | || ||||||||||| || ||||| ||||| || || || |||||||| Sbjct 10926243 TATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGACGCCGTTGGCATAGGG 10926184 Query 62496 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGATGTTCCC 62553 || | |||||| ||| |||| || ||||| | ||||| ||||| ||| | || Sbjct 10926183 GCGATTAATAAAGAATTCCTAACTCC--ATGTTTAGCAATTTTTTCTTTCAGAATTGTCC 10926126 Query 62554 AATTCCAAAGATC 62566 | ||||| | ||| Sbjct 10926125 AGTTCCATAAATC 10926113 Score = 118 bits (130), Expect = 1e-21 Identities = 237/347 (68%), Gaps = 12/347 (3%) Strand=Plus/Minus Query 62787 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62846 ||||| ||||| |||||| | ||| || ||| ||||| |||| ||||||||||| Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 62847 ATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTG 62903 | ||| |||||||| | | ||| | | |||||| |||| || | |||||| Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGTT-ACTTTTCGCAGTTTT 10925589 Query 62904 AGAAAATCAAATCGCCCAT--CTA----TTACAAACATGTTCAATGCAACAGATGCCAGA 62957 |||||||||| | || || |||||||||| |||| ||| | || || | | Sbjct 10925588 TCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGCTAAA 10925529 Query 62958 TTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 63017 || || || || | |||| | | | |||||||| || || || || | |||||| Sbjct 10925528 TTGCATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACTG 10925469 Query 63018 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63077 | ||||| || ||||||||||| ||||| || ||||| ||| |||||||| Sbjct 10925468 CTTTTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGC 10925409 Query 63078 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 ||| | ||||| || ||||||| ||||| | ||| ||| |||| Sbjct 10925408 ATGTAAGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCA 10925362 Score = 100 bits (110), Expect = 4e-16 Identities = 184/269 (68%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||||||||| || | |||| | ||| ||| | | ||||| || || ||||| Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATG 63757 | ||| || | | |||||| || || |||||| || ||||| |||| |||| Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATG 10924464 Query 63758 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTAT 63817 | ||||| || | |||||||||||| || ||||||||||| | ||| | ||| Sbjct 10924463 G----CAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTAT 10924408 Query 63818 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63877 ||| || || || | |||| | || || |||||||| || || || |||||||| Sbjct 10924407 TTTTAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCT 10924348 Query 63878 TTCGTAAATAATAACCGAATTGAGCTTAT 63906 || ||||| || | ||||| | ||||| Sbjct 10924347 ATCATAAATTATCGCAGAATTTAACTTAT 10924319 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 || || || || |||||||||| | | |||| |||||| |||||||| || ||| Sbjct 10925204 TCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGAC 10925145 Query 63249 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 63307 || | || | |||| |||||||||||||| |||||||| ||||| | ||| ||| || Sbjct 10925144 CATACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGC-ATAGAA 10925086 Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT--ATTCTTTTTA 63350 || ||||||| ||||| ||| || || ||||| ||| || ||| Sbjct 10925085 TAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 10925041 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| |||| || ||||||| |||| || |||| |||| ||| || |||||||||||| Sbjct 10925956 CCTTCATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAGCTAGCCTCTAATGCA 10925897 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 || ||||| | || ||||| || | |||| || | |||||||||| || |||||| Sbjct 10925896 CCATAATATAGTGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAAT 10925837 Query 62742 GGATA 62746 ||||| Sbjct 10925836 GGATA 10925832 >seq15 Length=11467329 Score = 109 bits (120), Expect = 7e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 ||||||| | ||||||||| || || |||||||||||||| || || ||||||||||| | Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 ||| |||||| | ||||||| || || | |||||||||| ||||||| Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTT 5181925 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 33387 TTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATC 33446 |||| | | || ||||| | || |||||||| || || ||||| |||||| ||| Sbjct 5183073 TTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACATA 5183014 Query 33447 ATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCA 33506 | | ||| ||||||||||| | || ||| || | ||| | || | ||||||||||||| Sbjct 5183013 AGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAATTCTTGTTCA 5182954 Query 33507 ATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAA 33566 || || |||| | | ||||| | | || || | |||| |||| | | Sbjct 5182953 ATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTTTGTACAATA 5182894 Query 33567 TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 ||||| ||||| |||||||||||||| || || | |||| Sbjct 5182893 TGTTTGAACATTAAACATGCGAAATCACAATGTAATCCCT 5182854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629773441913520