Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq6 163 3e-35 seq15 122 8e-23 >seq6 Length=12724418 Score = 163 bits (180), Expect = 3e-35 Identities = 227/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 38083 TTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTAT 38141 || || | ||||||| ||||| | || ||| || || ||||| || ||||||||||||| Sbjct 10924965 TTACCAATATTCTTT-TTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAA 10924907 Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201 ||| || | | ||||||||||||||||| ||||| |||| || ||||| | |||| || Sbjct 10924906 ATATATAGCAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATT 10924847 Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261 ||| |||| ||| | ||| || | || |||||||||| || | |||| | ||| Sbjct 10924846 ATTGTATACTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGG 10924787 Query 38262 AGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATAT 38321 || || | ||||| ||| | || | ||| || ||||| || || |||| || Sbjct 10924786 TGTGCCTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGC-TGATTTGCTAA 10924728 Query 38322 TAA-AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTA 38380 ||| || ||| |||||| |||||| | || || ||||| || ||||| | |||| || Sbjct 10924727 TAAGTGCACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTA 10924668 Query 38381 GTATAAAACAACT 38393 ||| ||||||||| Sbjct 10924667 GTAAAAAACAACT 10924655 Score = 158 bits (174), Expect = 1e-33 Identities = 220/305 (72%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 37050 AGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTAT 37109 ||||||||||| | | |||| ||| || || | | || ||| | || ||| | Sbjct 10926379 AGAACCATTATTTGCTATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCTTTCAGT 10926320 Query 37110 TAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGT 37169 || |||| |||| || |||||||| || ||||| |||||||| || |||||||||| Sbjct 10926319 CAGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGC 10926260 Query 37170 ATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGA 37229 ||| ||||| || ||||||||||| || || |||||||| | ||| ||||| | ||||| Sbjct 10926259 ATAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGA 10926200 Query 37230 TGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTT 37289 || || ||||| || || |||| | ||| || | ||||||| || |||| | | Sbjct 10926199 CGCCGTTGGCATAGGGGCGATTAATAAAGAATTCCTAACTCCATGTTTAGCAATTTTTTC 10926140 Query 37290 TTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATATCATATTGT 37347 ||| || |||| | ||||||||| ||||| || | || |||||| ||||||||| Sbjct 10926139 TTTCAGAATTGTCCAGTTCCATAAATCAGTTGGAGTAACATT--CCACATGTCATATTGT 10926082 Query 37348 AGAAT 37352 | ||| Sbjct 10926081 AAAAT 10926077 Score = 122 bits (134), Expect = 8e-23 Identities = 278/414 (67%), Gaps = 17/414 (4%) Strand=Plus/Minus Query 37537 ATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTG 37596 |||||||| || |||||||| ||| ||| | | ||| |||||||||||||| Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 37597 ATATCTATTATTTTATTTAGATTTTTAACTAGT----ATTTTCGTAATTATTCTCAACTT 37652 | ||| || ||||| | || ||| || ||| ||||| || | | ||| || || Sbjct 10925645 ACATCGATAATTTTGTCTAAATT----ACAAGTAACAATTTTTGTTACTTTTCGCAGTTT 10925590 Query 37653 GTCGAACATAAATACGTTATTA------TTAACAAATTTACTCAACGAAATAGATCCTAG 37706 || || |||| | |||| || ||||| || ||| | || || ||| Sbjct 10925589 TTCAAAATCAAATGTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAGCTAA 10925530 Query 37707 ATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACT 37766 ||| |||||||||| ||||||| | | |||||| || |||||||| | |||||| Sbjct 10925529 ATTGCATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAATTACT 10925470 Query 37767 CGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAG 37826 | | || || || ||||| ||||| ||||| ||||||| ||||||||| || Sbjct 10925469 GCTTTTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAG 10925410 Query 37827 TATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGC 37886 || || || |||||| ||| | ||||| | ||||| | |||||||| ||| || Sbjct 10925409 CATGTAAGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTCTCGC 10925350 Query 37887 TTTAA-CGATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGT 37939 || || | || |||| | |||||| || || || |||| | ||||| ||| Sbjct 10925349 TTGAATCTGACG-TTTATATCTTTTCTCAGTCTCATA-TCTAAAAATAATATGT 10925298 Score = 93.3 bits (102), Expect = 4e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| || ||||||||||| ||||||||| | ||| || ||| | |||| | Sbjct 10926794 TCCAGCCATAAAAATGCATTGAAGTCAGTTTTTCTGCTGTTGGTTTAGCCATATGAACAT 10926735 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||||||| || ||||||||||| ||||| | || |||||||||| ||| || | Sbjct 10926734 TCATTGACTGTGACTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAGATTATCT 10926675 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA 37033 | || | ||| |||||||| |||||||| | ||||| || || ||||| Sbjct 10926674 TCTGTGGTATTTCCCAAACGGTTTTATAAAGCATTTTTAAATCATTTGGTA 10926624 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 ||| |||| ||||| ||||| || || ||| |||| ||||||||||| |||||| Sbjct 10925202 AAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGACCA 10925143 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 | | ||| | || |||| |||||| | |||||||| |||||| ||| ||||| Sbjct 10925142 TACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGCATAGAATAA 10925083 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCT 38088 ||| | | ||||| |||||| || ||| Sbjct 10925082 TTCTCTTGCTCTATTTTCTTCTTTACCT 10925055 >seq15 Length=11467329 Score = 122 bits (134), Expect = 8e-23 Identities = 172/239 (72%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 11416 ATTATA-TACATTGA-AGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACG 11473 |||||| ||| || | | || |||||||| ||||| ||||| | ||||||||| || || Sbjct 5183094 ATTATAATACTTTTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACA 5183035 Query 11474 AATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCA 11533 ||||| ||||| ||| |||| | ||| ||||| ||||| | | || || | ||| Sbjct 5183034 AATTCGATATATTGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCG 5182975 Query 11534 ACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCC 11593 | || ||||| || | ||| || || || ||||| | || || ||||| | || Sbjct 5182974 TCCGTTAAAAATTCTTGTTCAATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCG 5182915 Query 11594 TTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 ||| ||| |||| | |||||| ||||||||||| || |||||||||||||| || Sbjct 5182914 CAAGACGGTTTTTGTACAATATGTTTGAACATTAAACATGCGAAATCACAATGTAATCC 5182856 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 11889 TATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAG 11948 ||||| | | ||||||||| || || | | ||||||||||| || | |||||| || | Sbjct 5182329 TATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACATTTTCTATGG 5182270 Query 11949 CTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTT 12008 | | |||||| ||||||||||| |||||||| | ||||| || | ||||| || Sbjct 5182269 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGACTAAATCGTT 5182210 Query 12009 CCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTA 12068 | | | |||||||| || || |||||| || ||||| ||||||| | ||| || Sbjct 5182209 CGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 5182150 Query 12069 TAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGA 12120 | || | ||| || || || |||| | || ||| ||| || ||| | ||| Sbjct 5182149 TGAAATGTTTCTCATCACTATTTAAATGATTCCAGTCAAATATATCCTGTGA 5182098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 11649 AACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtt 11708 ||||| | |||||| || || |||||| |||||| | ||| ||||| || |||| || Sbjct 5182663 AACCT-CATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTT 5182605 Query 11709 tttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAA 11768 |||| | ||| || ||||||||||| ||| |||||| || || ||||| || |||| Sbjct 5182604 TTTTCAGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAA 5182545 Query 11769 ATGCTACTACTCTTTC 11784 |||| || || | ||| Sbjct 5182544 ATGCAACCACACGTTC 5182529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468491950554960