Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 105 7e-18 seq172 95.1 1e-14 seq41 93.3 4e-14 seq15 93.3 4e-14 >seq1 Length=17153651 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| ||||| || | ||||||||||| || ||||||||||| | || || || Sbjct 7345276 CAACACTAAATGGCTTGTAGACTCTTTCTGGATGTTATAATCCGAAAGAGTTCTTCCATC 7345217 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| || ||||| |||||| |||||| ||| ||||| || ||||| || || |||||||| Sbjct 7345216 TTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCCTCTTTGTC 7345157 Query 139672 GGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGT 139731 ||| ||| ||| | | || | |||||| | | || || |||| || | || Sbjct 7345156 TTGGATCTTTGCTTTAACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGAGTAATAGT 7345097 Query 139732 CTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || ||||| ||||| || ||||| Sbjct 7345096 TTTCCCTGTTAAGGTTTTAACGAAGATCTGCAT 7345064 >seq172 Length=1724251 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 |||||||||| |||||||| || || | || | ||||| | || || |||||| | Sbjct 1092410 CTTTTTGAATATTATAATCTGACAGAGTACGTCCA-TCTTCCAATTGCTTTCCAGCAAAA 1092352 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT 139693 || |||||||||||||| || || || ||||| ||||| |||||| ||||| | | Sbjct 1092351 ATAAGACGTTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCTTTTACATTT 1092292 Query 139694 TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACG 139753 || | || || | | || || |||| ||| | || || || ||||| ||||| || Sbjct 1092291 TCAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACA 1092232 Query 139754 AATATTTGCAT 139764 ||||| ||||| Sbjct 1092231 AATATCTGCAT 1092221 >seq41 Length=919255 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | |||| || || || |||||||| |||||||| Sbjct 762536 CCTCCTCTCAGACGAAGAACAAGATGAAGAGTCGATTCCTTTTGAATATTATAATCAGAG 762595 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||| || |||||||||||| |||||| | ||| || || ||||| Sbjct 762596 AGTGTACGTCCA-TCTTCCAGTTGTTTACCAGCAAAGATCAACCTTTGTTGGTCTGGAGG 762654 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714 || ||||| ||||| ||| |||||| ||| | |||| || | || |||| | || Sbjct 762655 GATTCCTTCCTTGTC-TTGAATTTTTGCTTTCAC-GTTCTCAATAGTATCGGAAGCTTCA 762712 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || |||| || | || || || || | || || ||||| ||||||||| Sbjct 762713 ACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACGAAAATTTGCATA 762763 >seq15 Length=11467329 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 52521 AGACTTGATACTCAACGCTTTTGACAATGTTCCGTGTGT-GCGCAAAAAGGATGATTGGG 52579 |||||| | |||| || |||| ||| | || || || ||| |||||| | |||||| Sbjct 5182432 AGACTTTTTGTTCAATGCGATTGAAAATTTACCATGCGTTGCGAAAAAAGC-TAATTGGG 5182490 Query 52580 CATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTA 52639 | || || |||||| | | || | || || ||| | |||||| |||| || |||||| Sbjct 5182491 CGTTAAATTGGATCAATCATGAGAGTGCTACATTTCCTGAACGTGTGGTTGCATTTGCTG 5182550 Query 52640 TAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGG 52699 |||||||||| | || ||| ||||||||||| || || || | | |||| | Sbjct 5182551 CAGTGGAAGGTATTTTCTTTAGCGGTAGTTTTGCTGCTATTTTCTGGCTGAAAAAAAGAG 5182610 Query 52700 GCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATC 52739 | ||||||| || || || ||||| || ||| | || || Sbjct 5182611 GTTTAATGCCAGGACTTACATTTAGTAATGAGCTTATTTC 5182650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496029219712800