Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6 178 2e-39 seq15 104 3e-17 >seq6 Length=12724418 Score = 178 bits (196), Expect = 2e-39 Identities = 223/304 (73%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 78973 GATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 79032 || ||| || ||| ||||| ||| || || | |||| ||| | | ||| || || Sbjct 10926378 GAACCATTATTTGCTATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCTTTCAGTC 10926319 Query 79033 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 79092 | | ||| | | ||| ||||| || |||||||| ||||||||||| ||||| | | Sbjct 10926318 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 10926259 Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152 ||||||||||||||||||||||| | |||||||||||||| || ||||| ||||| || Sbjct 10926258 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAC 10926199 Query 79153 GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTAT 79210 |||||||||||||| || | |||||| ||| |||| || ||| | | ||||| | Sbjct 10926198 GCCGTTGGCATAGGGGCGATTAATAAAGAATTCCTAACTCC--ATGTTTAGCAATTTTTT 10926141 Query 79211 CTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTA 79270 |||| ||| | ||| | ||| | ||||| || ||||||||| | |||||||||| Sbjct 10926140 CTTTCAGAATTGTCCAGTTCCATAAATCAGTTGGAGTAACATTCCACATGTCATATTGTA 10926081 Query 79271 GAAT 79274 ||| Sbjct 10926080 AAAT 10926077 Score = 154 bits (170), Expect = 2e-32 Identities = 221/307 (72%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 |||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| | Sbjct 10924958 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 10924899 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | |||| |||| ||| |||||||| ||||| | |||| ||| || ||||| || | Sbjct 10924898 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 10924839 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG--CTTCC 80189 |||| | ||||||||| | |||||| ||| |||| || || || ||| | | || Sbjct 10924838 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 10924781 Query 80190 ACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 || || |||||| | || | | || || || || || || ||| || | || Sbjct 10924780 TCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTG 10924722 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 | |||| |||||| |||||||| || || ||||||||||||||| |||| | |||| || Sbjct 10924721 CACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAA 10924662 Query 80309 AACAGCT 80315 |||| || Sbjct 10924661 AACAACT 10924655 Score = 109 bits (120), Expect = 8e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| ||| |||||||| || || ||||| |||| || ||||| || ||||| | Sbjct 10924126 CACTAAAACTTTTCTTTGTTTCTTTATGAAGATTAGATATTGCAATTCTTGCAGCTAATA 10924067 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||||||||||| ||||| ||| || || |||| ||||| ||| |||| | Sbjct 10924066 TCGCATAATCTGGATGTTTAGTAGTCATAGTTGCGGCAGTTTCAGCTGCAAGATTGTCTA 10924007 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 |||| || || ||||| || ||||| || |||||| Sbjct 10924006 ATTCAACAGTGGTTACACCTGAATATAAACCACTGATAAC 10923967 Score = 109 bits (120), Expect = 8e-19 Identities = 263/393 (67%), Gaps = 24/393 (6%) Strand=Plus/Minus Query 79459 ATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 79518 ||||| ||||| |||||| | ||| || ||| ||||| |||| ||||||||||| Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646 Query 79519 ATATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTT----AG 79571 | ||| |||||||| | | ||| | | || ||| |||| | |||| || Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGT-----TACTTTTCGCAG 10925593 Query 79572 TTTGAGAAAATCAAATCGTCCATCTA-------TTACAAACATGTTCAACGCGACAGATG 79624 ||| |||||||||| ||| || |||||||||| |||| |||| || | Sbjct 10925592 TTTTTCAAAATCAAAT-GTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAG 10925534 Query 79625 CCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGT 79684 | | ||| || || || | |||| | | | |||||||| ||||| || || | | Sbjct 10925533 CTAAATTGCATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAAT 10925474 Query 79685 TACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 79744 |||| | || || || ||||||||||| ||||| || ||||| ||| |||| Sbjct 10925473 TACTGCTTTTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTAT 10925414 Query 79745 AAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 79804 |||| ||| | ||||| || ||||||| ||||| | ||| ||| |||| | ||| Sbjct 10925413 AAAGCATGTAAGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTC 10925354 Query 79805 GAGCCTTTATTATAGACTTGTATCTCTTTTCTC 79837 | ||| | | | ||| | ||| ||||||||| Sbjct 10925353 TCG-CTTGAATCT-GACGTTTATATCTTTTCTC 10925323 Score = 104 bits (114), Expect = 3e-17 Identities = 124/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || || || || ||||||||||| || |||||| |||| | |||||||| || ||| Sbjct 10925204 TCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGAC 10925145 Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979 || | |||| |||| |||||||||||||| |||||||| ||||| | ||| ||| || Sbjct 10925144 CATACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGC-ATAGAA 10925086 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT--ATTCTTTTTA 80022 || ||||| | ||||| || || || ||||| ||| || ||| Sbjct 10925085 TAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 10925041 Score = 93.3 bits (102), Expect = 6e-14 Identities = 172/252 (68%), Gaps = 8/252 (3%) Strand=Plus/Minus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||||||||| || | ||||| | ||| ||| | | ||||| || || ||||| Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATG 80429 | ||| || | | |||||| || || |||||| || ||||| |||| |||| Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATG 10924464 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 | || || || | |||||||||||| || ||||||||||| | || | ||| Sbjct 10924463 G----CAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTAT 10924408 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 ||| || || ||| | |||| | || || |||||||| || || || |||||||| Sbjct 10924407 TTTTAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCT 10924348 Query 80550 TTCGTAAATAAT 80561 || ||||| || Sbjct 10924347 ATCATAAATTAT 10924336 >seq15 Length=11467329 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 ||||||| | ||| ||||| || || |||||||||||||| || || ||||||||||| | Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 ||| |||||| | ||||||| || || | |||||||||| ||||||| Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTT 5181925 Score = 102 bits (112), Expect = 1e-16 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 49756 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATAT 49815 ||| ||| |||| | | || ||||| | || |||||||| || |||||||| |||||| Sbjct 5183082 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 5183023 Query 49816 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 49875 ||| | | ||| ||||||||||| | || ||| || | ||| | || | |||| Sbjct 5183022 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAAT 5182963 Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 49935 ||||||||||| || |||||| | ||||| || | || || | |||| Sbjct 5182962 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTT 5182903 Query 49936 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 || | | |||||| ||||| |||||||||||||| || || | |||| Sbjct 5182902 TGTACAATATGTTTGAACATTAAACATGCGAAATCACAATGTAATCCCT 5182854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718218440378760