Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03]
5,609 sequences; 248,654,244 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq6 178 2e-39
seq15 104 3e-17
>seq6
Length=12724418
Score = 178 bits (196), Expect = 2e-39
Identities = 223/304 (73%), Gaps = 4/304 (1%)
Strand=Plus/Minus
Query 78973 GATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTT 79032
|| ||| || ||| ||||| ||| || || | |||| ||| | | ||| || ||
Sbjct 10926378 GAACCATTATTTGCTATAATTTCATTTTTCATATTCTCATCCCAAAGATCTCTTTCAGTC 10926319
Query 79033 AAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTG 79092
| | ||| | | ||| ||||| || |||||||| ||||||||||| ||||| | |
Sbjct 10926318 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 10926259
Query 79093 TAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGAT 79152
||||||||||||||||||||||| | |||||||||||||| || ||||| ||||| ||
Sbjct 10926258 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAC 10926199
Query 79153 GCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTTTAT 79210
|||||||||||||| || | |||||| ||| |||| || ||| | | ||||| |
Sbjct 10926198 GCCGTTGGCATAGGGGCGATTAATAAAGAATTCCTAACTCC--ATGTTTAGCAATTTTTT 10926141
Query 79211 CTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTA 79270
|||| ||| | ||| | ||| | ||||| || ||||||||| | ||||||||||
Sbjct 10926140 CTTTCAGAATTGTCCAGTTCCATAAATCAGTTGGAGTAACATTCCACATGTCATATTGTA 10926081
Query 79271 GAAT 79274
|||
Sbjct 10926080 AAAT 10926077
Score = 154 bits (170), Expect = 2e-32
Identities = 221/307 (72%), Gaps = 6/307 (2%)
Strand=Plus/Minus
Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071
|||||||||||||||| | || | | ||||| | |||||| ||||| || ||||| |
Sbjct 10924958 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 10924899
Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131
| | |||| |||| ||| |||||||| ||||| | |||| ||| || ||||| || |
Sbjct 10924898 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 10924839
Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG--CTTCC 80189
|||| | ||||||||| | |||||| ||| |||| || || || ||| | | ||
Sbjct 10924838 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACC--AGCTATTGGTGTGCC 10924781
Query 80190 ACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248
|| || |||||| | || | | || || || || || || ||| || | ||
Sbjct 10924780 TCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCTGATTTGCTAATAAGTG 10924722
Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308
| |||| |||||| |||||||| || || ||||||||||||||| |||| | |||| ||
Sbjct 10924721 CACATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAA 10924662
Query 80309 AACAGCT 80315
|||| ||
Sbjct 10924661 AACAACT 10924655
Score = 109 bits (120), Expect = 8e-19
Identities = 120/160 (75%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737
||||||| ||| |||||||| || || ||||| |||| || ||||| || ||||| |
Sbjct 10924126 CACTAAAACTTTTCTTTGTTTCTTTATGAAGATTAGATATTGCAATTCTTGCAGCTAATA 10924067
Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797
| |||||||||||||||| ||||| ||| || || |||| ||||| ||| |||| |
Sbjct 10924066 TCGCATAATCTGGATGTTTAGTAGTCATAGTTGCGGCAGTTTCAGCTGCAAGATTGTCTA 10924007
Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837
|||| || || ||||| || ||||| || ||||||
Sbjct 10924006 ATTCAACAGTGGTTACACCTGAATATAAACCACTGATAAC 10923967
Score = 109 bits (120), Expect = 8e-19
Identities = 263/393 (67%), Gaps = 24/393 (6%)
Strand=Plus/Minus
Query 79459 ATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTA 79518
||||| ||||| |||||| | ||| || ||| ||||| |||| |||||||||||
Sbjct 10925705 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCAGGAACTGGATAATAATTC 10925646
Query 79519 ATATCTATAATTTTATTGAGATTCC---TGACTATTACTTTGACCACATCCTTT----AG 79571
| ||| |||||||| | | ||| | | || ||| |||| | |||| ||
Sbjct 10925645 ACATCGATAATTTTGTCTAAATTACAAGTAACAATT--TTTGT-----TACTTTTCGCAG 10925593
Query 79572 TTTGAGAAAATCAAATCGTCCATCTA-------TTACAAACATGTTCAACGCGACAGATG 79624
||| |||||||||| ||| || |||||||||| |||| |||| || |
Sbjct 10925592 TTTTTCAAAATCAAAT-GTCTGATTACTGGAGTTTACAAACATATTCACTGCGATTGAAG 10925534
Query 79625 CCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGT 79684
| | ||| || || || | |||| | | | |||||||| ||||| || || | |
Sbjct 10925533 CTAAATTGCATACAGCAATTTCATCTGGACTGGAATATTGTACGATTTCTGTACATAAAT 10925474
Query 79685 TACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTAT 79744
|||| | || || || ||||||||||| ||||| || ||||| ||| ||||
Sbjct 10925473 TACTGCTTTTGATCGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTAT 10925414
Query 79745 AAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC 79804
|||| ||| | ||||| || ||||||| ||||| | ||| ||| |||| | |||
Sbjct 10925413 AAAGCATGTAAGGAGTTCCTGTTTCAACTTGAGAAATAAGAATAGCTGTCCATAAATCTC 10925354
Query 79805 GAGCCTTTATTATAGACTTGTATCTCTTTTCTC 79837
| ||| | | | ||| | ||| |||||||||
Sbjct 10925353 TCG-CTTGAATCT-GACGTTTATATCTTTTCTC 10925323
Score = 104 bits (114), Expect = 3e-17
Identities = 124/165 (75%), Gaps = 4/165 (2%)
Strand=Plus/Minus
Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920
|| || || || ||||||||||| || |||||| |||| | |||||||| || |||
Sbjct 10925204 TCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTGGACACATTAAAGAC 10925145
Query 79921 CACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 79979
|| | |||| |||| |||||||||||||| |||||||| ||||| | ||| ||| ||
Sbjct 10925144 CATACACCATTATCCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGC-ATAGAA 10925086
Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT--ATTCTTTTTA 80022
|| ||||| | ||||| || || || ||||| ||| || |||
Sbjct 10925085 TAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 10925041
Score = 93.3 bits (102), Expect = 6e-14
Identities = 172/252 (68%), Gaps = 8/252 (3%)
Strand=Plus/Minus
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
||||||||||| || | ||||| | ||| ||| | | ||||| || || |||||
Sbjct 10924583 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 10924524
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC----CCATTGATG 80429
| ||| || | | |||||| || || |||||| || ||||| |||| ||||
Sbjct 10924523 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCACCATGGATG 10924464
Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489
| || || || | |||||||||||| || ||||||||||| | || | |||
Sbjct 10924463 G----CAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACTACTTTCCCTTGTAT 10924408
Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549
||| || || ||| | |||| | || || |||||||| || || || ||||||||
Sbjct 10924407 TTTTAATAAATAACTTCTTTCAAGTGTCTTGAAACCAAAGTAATTATAACTAAAGTCTCT 10924348
Query 80550 TTCGTAAATAAT 80561
|| ||||| ||
Sbjct 10924347 ATCATAAATTAT 10924336
>seq15
Length=11467329
Score = 104 bits (114), Expect = 3e-17
Identities = 89/110 (81%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503
||||||| | ||| ||||| || || |||||||||||||| || || ||||||||||| |
Sbjct 5182034 CTTTAGAAAGATCCACTTCCTCGACAGTCCAAAATGATGCTTCAGCTTTTTTATACATTT 5181975
Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553
||| |||||| | ||||||| || || | |||||||||| |||||||
Sbjct 5181974 GCCAAATGTCAGGCCATTGGATAGGAAAGACAACAAATCTACGTGGATTT 5181925
Score = 102 bits (112), Expect = 1e-16
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 49756 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATAT 49815
||| ||| |||| | | || ||||| | || |||||||| || |||||||| ||||||
Sbjct 5183082 TTACAAACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATAT 5183023
Query 49816 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 49875
||| | | ||| ||||||||||| | || ||| || | ||| | || | ||||
Sbjct 5183022 TGACACATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAAT 5182963
Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 49935
||||||||||| || |||||| | ||||| || | || || | ||||
Sbjct 5182962 TCTTGTTCAATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTT 5182903
Query 49936 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984
|| | | |||||| ||||| |||||||||||||| || || | ||||
Sbjct 5182902 TGTACAATATGTTTGAACATTAAACATGCGAAATCACAATGTAATCCCT 5182854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718218440378760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |