Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq15 107 2e-18 >seq15 Length=11467329 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || || ||||| |||| |||| |||||||||||||||| ||| || ||||||||| || Sbjct 5183076 ACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACAC 5183017 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || | ||| ||||| ||||| | || ||||| | | ||||||||||||| | Sbjct 5183016 ATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAATTCTTGT 5182957 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTT 13853 || || ||||| |||| ||||||||| | | | || ||| || | || | Sbjct 5182956 TCAATTTTGACAGCATCTT---TAATAATTGACGTGACCCGATCGCAAGACGGTTTTTGT 5182900 Query 13854 ---AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13896 | |||||| || |||||||| || ||||||||||| | |||| Sbjct 5182899 ACAATATGTTTGAACATTAAACATGCGAAATCACAATGTAATCCCT 5182854 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||| |||||| || || |||||| | ||||||||| || |||| ||||| Sbjct 5182661 CCTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTT 5182602 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| || || |||||||| ||| |||||| || || || ||||||||||| | Sbjct 5182601 TCAGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATG 5182542 Query 14014 C 14014 | Sbjct 5182541 C 5182541 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||| ||| || || ||||||||||| | | |||||||| ||||| | | Sbjct 5182338 TCTCTTTGGTATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACAT 5182279 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAG 14243 |||| || || | ||||||||||| || || | || || | ||||||||| || Sbjct 5182278 TTTCTATGGCGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGAC 5182219 Query 14244 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14302 | ||||| |||| | | || |||||||| || |||||| ||| ||||| ||||| || Sbjct 5182218 T-AAATCGTTCGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAA 5182161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479694365070600