Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 1e-13 >seq15 Length=11467329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 129/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 13913 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||| ||| || || ||||||||||| | | |||||||| ||||| | | Sbjct 5182338 TCTCTTTGGTATCTGTGATATATGTATCAATCAACATAGAGTACATTTCTGAGTGCACAT 5182279 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAG 14031 ||||||| || | ||||||||||| ||||| | || || | |||||| || || Sbjct 5182278 TTTCTATGGCGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCTTGAC 5182219 Query 14032 TAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAA 14090 | ||||| ||| | | ||| |||||||| || |||||| ||| ||||| ||||| || Sbjct 5182218 T-AAATCGTTCGACGAGGTTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAA 5182161 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 ||||||||||| |||||| || || |||||| | ||||||||| || |||| ||||| Sbjct 5182661 CCTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTT 5182602 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| || || ||||| || ||| |||||| || || || ||||||||||| | Sbjct 5182601 TCAGCCAGAAAATAGCAGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATG 5182542 Query 13802 C 13802 | Sbjct 5182541 C 5182541 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 || || ||||| |||| |||| | |||||||||||||| ||| || ||||||||| || Sbjct 5183076 ACCTTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACAC 5183017 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 || | ||| ||||| ||||| | || ||||| | | ||||||||||||| | Sbjct 5183016 ATAAGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCGTCCGTTAAAAATTCTTGT 5182957 Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT 13641 || || ||||| || || ||||| | | | || ||| || | | Sbjct 5182956 TCAATTTTGACAGCATCTTTAATAATTGACGTGACCCGATCGCAAGACGGTTTTTGTACA 5182897 Query 13642 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCT 13684 | |||||| || |||||||| || ||||||||||| | |||| Sbjct 5182896 ATATGTTTGAACATTAAACATGCGAAATCACAATGTAATCCCT 5182854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478555244942760