Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20terrestris_20[refseq_20GCF_5F000214255.1_202011-06-03] 5,609 sequences; 248,654,244 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq41 95.1 9e-15 >seq41 Length=919255 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||||||| || | ||| || | || ||||||||||| || || || Sbjct 762344 TCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTGTTTACCAGCGAAG 762403 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| | |||||| || | || | ||||| || || || |||| || | Sbjct 762404 ATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACATTC 762463 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || || ||| || || || | ||||| |||||||| || || ||||| ||| Sbjct 762464 TCAATAGTATCAGAAGCTTCAACTTCAAGAGTTATTGTTTTTCCTGTAAGGGTTTTTACA 762523 Query 43099 AAAATTTGCATT 43110 |||||||||||| Sbjct 762524 AAAATTTGCATT 762535 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| ||||| || | ||||||| | || |||| |||||| || ||||| Sbjct 762572 TCCTTTTGAATATTATAATCAGAGAGTGTACGTCCATCTTCCAGTTGTTTACCAGCAAAG 762631 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| | ||||| || | || | ||||| || || || |||| || | Sbjct 762632 ATCAACCTTTGTTGGTCTGGAGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTC 762691 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || ||| ||| || || || | ||||||||||| || || || || || || Sbjct 762692 TCAATAGTATCGGAAGCTTCAACTTCAAGAGTTATAGTTTTCCCTGTAAGGGTCTTGACG 762751 Query 43099 AAAATTTGCAT 43109 ||||||||||| Sbjct 762752 AAAATTTGCAT 762762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||| |||||||| | |||||| |||| || | ||| || || ||||| Sbjct 762800 TCCTTTTGAATATTATAATCGGAGAGCGTACGTCCGTCTTCAAGTTGCTTTCCAGCAAAG 762859 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| | |||||||| | ||| | ||||| || || || |||| || | Sbjct 762860 ATCAACCTTTGTTGATCCGGCGGAATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTC 762919 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || ||| ||| || || || | || ||||||||||| || || || || || Sbjct 762920 TCAATAGTATCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTCAGTGTCTTGACG 762979 Query 43099 AAAATTTGCAT 43109 || || ||||| Sbjct 762980 AAGATCTGCAT 762990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381343529693322